View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8092_high_6 (Length: 367)

Name: NF8092_high_6
Description: NF8092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8092_high_6
NF8092_high_6
[»] chr8 (1 HSPs)
chr8 (1-351)||(5593873-5594219)
[»] chr3 (8 HSPs)
chr3 (1-351)||(22831846-22832192)
chr3 (5-351)||(22941218-22941559)
chr3 (5-325)||(22916541-22916859)
chr3 (5-325)||(22932228-22932546)
chr3 (97-202)||(23032801-23032906)
chr3 (96-202)||(23039142-23039248)
chr3 (69-202)||(23036244-23036377)
chr3 (97-202)||(23017164-23017269)
[»] chr1 (3 HSPs)
chr1 (1-242)||(15885715-15885951)
chr1 (97-202)||(12610007-12610112)
chr1 (97-191)||(12637103-12637197)
[»] scaffold0554 (1 HSPs)
scaffold0554 (97-221)||(6528-6652)
[»] scaffold0059 (1 HSPs)
scaffold0059 (98-202)||(62256-62360)
[»] chr4 (1 HSPs)
chr4 (85-135)||(55954984-55955034)
[»] chr5 (2 HSPs)
chr5 (97-134)||(41465802-41465839)
chr5 (294-338)||(31188068-31188112)


Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 5594219 - 5593873
Alignment:
Q  1 aaaaggaatgaactcaaaattattacccttatagtccacacaactatcaatgaatctttcaggataaaataaaatctttctgggtcatcccaatgatttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||| |||||||||||||    
T  5594219 aaaaggaatgaactcaaaattattacccttatagtccacacaactatcaatgaatctttcaggataaaat-----ctttctgggtcgtcccaatgatttg 5594125  T
Q  101 gatctcttccaatagcccaagcatttactatcacgttgcttttaaaaggtatatcatacccatttatctcacatgcttgtccacattctcttgaaagcaa 200  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  5594124 gatctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatctcacatgcttttccacattctcttggaagcaa 5594025  T
Q  201 aaatgttgcaggagggtgtaatctcaatgtctctttcacaacgcattttaaatattttaatttctccatgtcactttcattgggttttctttctttatc- 299  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5594024 aaatgttgacggagggtgtaatctcaatgtctctttcacaacgcattttaaatattttaatttctccatgtcactttcattgggttttctttctttatca 5593925  T
Q  300 aaatacctctcttacttcagcttgtactttctccattattttgggaatttta 351  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  5593924 aaatacctctcttacctcagcttgtactttctccattattttgggattttta 5593873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 22831846 - 22832192
Alignment:
Q  1 aaaaggaatgaactcaaaattattacccttatagtccacacaactatcaatgaatctttcaggataaaataaaatctttctgggtcatcccaatgatttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||| |||||||||||||    
T  22831846 aaaaggaatgaactcaaaattattacccttatagtccacacaactatcaatgaatctttcaggataa-----aatctttctgggtcgtcccaatgatttg 22831940  T
Q  101 gatctcttccaatagcccaagcatttactatcacgttgcttttaaaaggtatatcatacccatttatctcacatgcttgtccacattctcttgaaagcaa 200  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  22831941 gatctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatctcacatgcttttccacattctcttggaagcaa 22832040  T
Q  201 aaatgttgcaggagggtgtaatctcaatgtctctttcacaacgcattttaaatattttaatttctccatgtcactttcattgggttttctttctttatc- 299  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  22832041 aaatgttgacggagggtgtaatctcaatgtctctttcacaacgcattttaaatattttaatttctccatgtcactttcattgggttttctttctttatca 22832140  T
Q  300 aaatacctctcttacttcagcttgtactttctccattattttgggaatttta 351  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  22832141 aaatacctctcttacctcagcttgtactttctccattattttgggattttta 22832192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 5 - 351
Target Start/End: Complemental strand, 22941559 - 22941218
Alignment:
Q  5 ggaatgaactcaaaattattacccttatagtccacacaactatcaatgaatctttcaggataaaataaaatctttctgggtcatcccaatgatttggatc 104  Q
    |||||||||||||||||||| |||||||| || |||||||| ||||| || |||||||||||||||     || ||||||||||||||||||||||||||    
T  22941559 ggaatgaactcaaaattatttcccttataatctacacaactttcaataaacctttcaggataaaat-----ctctctgggtcatcccaatgatttggatc 22941465  T
Q  105 tcttccaatagcccaagcatttactatcacgttgcttttaaaaggtatatcatacccatttatctcacatgcttgtccacattctcttgaaagcaaaaat 204  Q
    ||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  22941464 tcttccaatggcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatttcacatgcttgtccacattctcttggaagcaaaaat 22941365  T
Q  205 gttgcaggagggtgtaatctcaatgtctctttcacaacgcattttaaatattttaatttctccatgtcactttcattgggttttctttctttatcaaata 304  Q
    |  ||||||||||| |||||||||||||||||||||||  ||||||| ||| ||||||||||||||||||||||||| || |||||||||||||||||||    
T  22941364 gcagcaggagggtgcaatctcaatgtctctttcacaacatattttaagtatgttaatttctccatgtcactttcattagggtttctttctttatcaaata 22941265  T
Q  305 cctctcttacttcagcttgtactttctccattattttgggaatttta 351  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  22941264 cctctcttacttcagcttgtactttctccattattttgggattttta 22941218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 5 - 325
Target Start/End: Complemental strand, 22916859 - 22916541
Alignment:
Q  5 ggaatgaactcaaaattattaccctt---atagtccacacaactatcaatgaatctttcaggataaaataaaatctttctgggtcatcccaatgatttgg 101  Q
    ||||||||||||||||||||||| ||   ||| || |||||| | || ||||| ||||||||     ||||||||||||||| |||||||||| ||||||    
T  22916859 ggaatgaactcaaaattattacctttgtaataatctacacaattgtcgatgaacctttcagg-----ataaaatctttctggatcatcccaattatttgg 22916765  T
Q  102 atctcttccaatagcccaagcatttactatcacgttgcttttaaaaggtatatcatacccatttatctcacatgcttgtccacattctcttgaaagcaaa 201  Q
    |||||||||||| ||||||||||| |||||||| ||||||||||| |||||| ||||||||||||| ||||||||||||||||| || ||||  |  |||    
T  22916764 atctcttccaatggcccaagcattcactatcactttgcttttaaatggtataccatacccatttatttcacatgcttgtccacactcccttggcaataaa 22916665  T
Q  202 aatgttgcaggagggtgtaatctcaatgtctctttcacaacgcattttaaatattttaatttctccatgtcactttcattgggttttctttctttatcaa 301  Q
    |||| | ||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22916664 aatgctccaggaggatgtaatctcaatgtctctttcacaacacactttaaatattttaatttctccatgtcactttcattgggttttctttctttttcaa 22916565  T
Q  302 atacctctcttacttcagcttgta 325  Q
    ||||||||||||| ||||||||||    
T  22916564 atacctctcttacctcagcttgta 22916541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 5 - 325
Target Start/End: Original strand, 22932228 - 22932546
Alignment:
Q  5 ggaatgaactcaaaattattaccctt---atagtccacacaactatcaatgaatctttcaggataaaataaaatctttctgggtcatcccaatgatttgg 101  Q
    ||||||||||||||||||||||| ||   ||| || |||||| | || ||||| ||||||||     ||||||||||||||| |||||||||| ||||||    
T  22932228 ggaatgaactcaaaattattacctttgtaataatctacacaattgtcgatgaacctttcagg-----ataaaatctttctggatcatcccaattatttgg 22932322  T
Q  102 atctcttccaatagcccaagcatttactatcacgttgcttttaaaaggtatatcatacccatttatctcacatgcttgtccacattctcttgaaagcaaa 201  Q
    |||||||||||| |||||| |||| ||||| || ||||||||||| || ||| ||||||||||||| ||||||||||||||||| || ||||  |  |||    
T  22932323 atctcttccaatggcccaaacattcactattactttgcttttaaatgggataccatacccatttatttcacatgcttgtccacactcccttggcaataaa 22932422  T
Q  202 aatgttgcaggagggtgtaatctcaatgtctctttcacaacgcattttaaatattttaatttctccatgtcactttcattgggttttctttctttatcaa 301  Q
    ||||   |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22932423 aatgcaccaggagggtgtaatctcaatgtctctttcacaacacactttaaatattttaatttctccatgtcactttcattgggttttctttctttttcaa 22932522  T
Q  302 atacctctcttacttcagcttgta 325  Q
    ||||||||||||| ||||||||||    
T  22932523 atacctctcttacctcagcttgta 22932546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 202
Target Start/End: Original strand, 23032801 - 23032906
Alignment:
Q  97 tttggatctcttccaatagcccaagcatttactatcacgttgcttttaaaaggtatatcatacccatttatctcacatgcttgtccacattctcttgaaa 196  Q
    |||||||||||| |||| ||||||||||| |||||||| || |||||||  ||||| | ||| |||||||||||||||||||| || ||||||||||  |    
T  23032801 tttggatctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttgaccgcattctcttggta 23032900  T
Q  197 gcaaaa 202  Q
    ||||||    
T  23032901 gcaaaa 23032906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 23039142 - 23039248
Alignment:
Q  96 atttggatctcttccaatagcccaagcatttactatcacgttgcttttaaaaggtatatcatacccatttatctcacatgcttgtccacattctcttgaa 195  Q
    ||||||||||||| |||| ||||||||||| |||||||| || || |||| |||||| | ||| |||||||||||||||| ||| | |||||||||||      
T  23039142 atttggatctcttgcaattgcccaagcattgactatcaccttactcttaataggtatgtgataaccatttatctcacatgtttgacgacattctcttggc 23039241  T
Q  196 agcaaaa 202  Q
    |||||||    
T  23039242 agcaaaa 23039248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 202
Target Start/End: Original strand, 23036244 - 23036377
Alignment:
Q  69 ataaaatctttctgggtcatcccaatgatttggatctcttccaatagcccaagcatttactatcacgttgcttttaaaaggtatatcatacccatttatc 168  Q
    ||||||||| ||||| |||  ||| | ||||||||||||| |||| ||||||||||||| | | || || || |||| |||||| | ||| |||||||||    
T  23036244 ataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatc 23036343  T
Q  169 tcacatgcttgtccacattctcttgaaagcaaaa 202  Q
     ||||||||||  |||| |||||||  |||||||    
T  23036344 acacatgcttgaacacactctcttggtagcaaaa 23036377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 202
Target Start/End: Original strand, 23017164 - 23017269
Alignment:
Q  97 tttggatctcttccaatagcccaagcatttactatcacgttgcttttaaaaggtatatcatacccatttatctcacatgcttgtccacattctcttgaaa 196  Q
    |||||||||||| | || ||||||||||| | |||||| ||  | ||||  ||||| | ||| |||| ||||||||||||||  |||||||||||||  |    
T  23017164 tttggatctcttgcgattgcccaagcattaattatcaccttagtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctcttggta 23017263  T
Q  197 gcaaaa 202  Q
    ||||||    
T  23017264 gcaaaa 23017269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 15885951 - 15885715
Alignment:
Q  1 aaaaggaatgaactcaaaattattacccttatagtccacacaactatcaatgaatctttcaggataaaataaaatctttctgggtcatcccaatgatttg 100  Q
    |||||||||| ||||||||||||| || |||||||| | | | ||| |||||||||| || ||||||||      || ||||| |||  |||||  ||||    
T  15885951 aaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaac-----ctctctggttcagtccaatactttg 15885857  T
Q  101 gatctcttccaatagcccaagcatttactatcacgttgcttttaaaaggtatatcatacccatttatctcacatgcttgtccacattctcttgaaagcaa 200  Q
    ||||||||||||| ||||| ||||| |||||||| ||||||||    ||||||| ||| ||||  ||||||||||||||| |||||||||||| ||| ||    
T  15885856 gatctcttccaatcgcccatgcattgactatcaccttgcttttggttggtatatgataaccatcaatctcacatgcttgttcacattctcttggaagtaa 15885757  T
Q  201 aaatgttgcaggagggtgtaatctcaatgtctctttcacaac 242  Q
    ||  |  || ||||||||||| || || ||||||||||||||    
T  15885756 aagaggagctggagggtgtaaccttaaggtctctttcacaac 15885715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 97 - 202
Target Start/End: Original strand, 12610007 - 12610112
Alignment:
Q  97 tttggatctcttccaatagcccaagcatttactatcacgttgcttttaaaaggtatatcatacccatttatctcacatgcttgtccacattctcttgaaa 196  Q
    ||||||||||||||||| ||||| ||||| |||||||| |||||||| |  ||||||  ||||||||  |||||||||||||||||||||||||||| ||    
T  12610007 tttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatacgatacccatcaatctcacatgcttgtccacattctcttggaa 12610106  T
Q  197 gcaaaa 202  Q
    | ||||    
T  12610107 gtaaaa 12610112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 191
Target Start/End: Original strand, 12637103 - 12637197
Alignment:
Q  97 tttggatctcttccaatagcccaagcatttactatcacgttgcttttaaaaggtatatcatacccatttatctcacatgcttgtccacattctct 191  Q
    ||||||||||| ||||| | ||| |||||||||||||| || |||||    ||||||| |||||| |  || |||||||||||||||||||||||    
T  12637103 tttggatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct 12637197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 221
Target Start/End: Complemental strand, 6652 - 6528
Alignment:
Q  97 tttggatctcttccaatagcccaagcatttactatcacgttgcttttaaaaggtatatcatacccatttatctcacatgcttgtccacattctcttgaaa 196  Q
    |||||||||||| |||| ||||||||||| | |||||| || ||  |||| ||||| | ||| |||||||||||||||||||  |||||||||||||  |    
T  6652 tttggatctcttgcaattgcccaagcattgattatcaccttactcctaaacggtatgttataaccatttatctcacatgctttaccacattctcttggta 6553  T
Q  197 gcaaaaatgttgcaggagggtgtaa 221  Q
    ||||||  | ||| |||||||||||    
T  6552 gcaaaagaggtgctggagggtgtaa 6528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 202
Target Start/End: Original strand, 62256 - 62360
Alignment:
Q  98 ttggatctcttccaatagcccaagcatttactatcacgttgcttttaaaaggtatatcatacccatttatctcacatgcttgtccacattctcttgaaag 197  Q
    ||||||||||||| || ||||| ||||| |||||||  ||  |||| |  ||||||| ||||||||  ||||||||||||| || ||||||||||| |||    
T  62256 ttggatctcttccgattgcccatgcattaactatcagctttgttttcattggtatatgatacccatcaatctcacatgcttctctacattctcttggaag 62355  T
Q  198 caaaa 202  Q
     ||||    
T  62356 taaaa 62360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 55954984 - 55955034
Alignment:
Q  85 tcatcccaatgatttggatctcttccaatagcccaagcatttactatcacg 135  Q
    |||| |||||| || |||||||||||||| ||||| |||||||||||||||    
T  55954984 tcataccaatgtttgggatctcttccaattgcccatgcatttactatcacg 55955034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 41465839 - 41465802
Alignment:
Q  97 tttggatctcttccaatagcccaagcatttactatcac 134  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  41465839 tttggatctcttccaatcgcccatgcatttactatcac 41465802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 338
Target Start/End: Original strand, 31188068 - 31188112
Alignment:
Q  294 tttatcaaatacctctcttacttcagcttgtactttctccattat 338  Q
    ||||||||| || | |||||||||||||||| |||||||||||||    
T  31188068 tttatcaaacacttttcttacttcagcttgtgctttctccattat 31188112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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