View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8092_high_9 (Length: 345)
Name: NF8092_high_9
Description: NF8092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8092_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 25 - 163
Target Start/End: Original strand, 30025981 - 30026119
Alignment:
| Q |
25 |
tgaagaaacaaagaaatgtagaaacaatctcaacaaagaaacaaagatgtagaattagttcaacaaagaaatgaagatgcaaaaacgagttcaccaagaa |
124 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30025981 |
tgaagaaacaaagaaatgtagaaacaagctcaacaaagaaacaaagatgtagaattagttcaacaaagaaatgaagatgcaaaaacgagttcaccaagaa |
30026080 |
T |
|
| Q |
125 |
aacaagatgcaaaaacgagttcaacgaagacacataaat |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30026081 |
aacaagatgcaaaaacgagttcaacgaagacacataaat |
30026119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 278 - 327
Target Start/End: Original strand, 30026234 - 30026283
Alignment:
| Q |
278 |
ttcgtttcagatgctttcttagtgatgtttcttctcctgaatgttaataa |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30026234 |
ttcgtttcagatgctttcttagtgatgtttcttctcctgaatgttaataa |
30026283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 34283162 - 34283294
Alignment:
| Q |
25 |
tgaagaaacaaagaaatgtagaaacaatctcaacaaagaaacaaagatgtagaa-ttagttcaacaaagaaatgaagatgcaaaaacgagttc-accaag |
122 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| || |||| |||||| |||| |||||||||| ||||||| |||||| |||||||||||| || ||| |
|
|
| T |
34283162 |
tgaagaaacaaagaaatgtagaaacgagttcaacgaaaaaacgaagatgcagaaattagttcaacgaagaaattaagatggaaaaacgagttcaacaaag |
34283261 |
T |
|
| Q |
123 |
aaaacaagatgcaaaaacgagttcaacgaagac |
155 |
Q |
| |
|
||| ||||||||||||| |||||||| ||||| |
|
|
| T |
34283262 |
aaacgaagatgcaaaaacaagttcaacaaagac |
34283294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University