View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8092_low_1 (Length: 518)
Name: NF8092_low_1
Description: NF8092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8092_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 17 - 503
Target Start/End: Complemental strand, 12875203 - 12874721
Alignment:
| Q |
17 |
aagtaatataatataaatgaaatggattactggtaaaggggagtcagatgctttgaaggctccttccattctcttataatcaatgggattaagagaagca |
116 |
Q |
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| T |
12875203 |
aagtaatataatataaatgaaatggattactggtaaaggggagtcagaggctttgaaggctccttccattctcttataatcaatgggattaagagaagca |
12875104 |
T |
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| Q |
117 |
gcagcaactttgataagaacttgatcatccttcacttcaggaataggcacgtttggatcaaatttgagaacatcaacagagtgaccatattctgagtaag |
216 |
Q |
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| T |
12875103 |
gcagcaactttgataagaacttgatcatccttcacttgaggaataggcacgtttggatcaaacttgagaacatcaacagagtgaccatattctgagtaag |
12875004 |
T |
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| Q |
217 |
tccaagcttttatggtagttatttcagatgccatgattgttggaaatgagaaatgaattatttgataaaagtgatatgaggataataaaatatcagctta |
316 |
Q |
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| T |
12875003 |
tccaagctttgatggtagttatttcagaggccatgattgttggaaatgagaaatgaattatttgataaaagtgatttgaggataataaaatatcagctta |
12874904 |
T |
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| Q |
317 |
ttgactg------accatgcttttaacgtgattggataaacgtatatttaaagtgcttttgggagagatgccaggtactactaccaactgacggatcaca |
410 |
Q |
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| T |
12874903 |
ttgactgaccaagaccatgcttttaacgtgattggataaacgtatatttaaagtgcttttgg--gagatgcca-gtac----actaactgtcggatcaca |
12874811 |
T |
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| Q |
411 |
ttcatatctgttattgtccataataatgcaaattatgaaattgataaaaaaggatagtaaaggaaagaaataaatatttgtacgaaaagaata |
503 |
Q |
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|||| || ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12874810 |
ttcacatttgttattgttcataataatgcaaatt---aaattgataaaaaaggatagtaaaggaaagaaataaatatttgtacgaaaataata |
12874721 |
T |
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