View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8092_low_10 (Length: 355)
Name: NF8092_low_10
Description: NF8092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8092_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 12 - 352
Target Start/End: Original strand, 384409 - 384749
Alignment:
| Q |
12 |
gagatgaaggaagctattgatcataggaacaacggttcgaagtcacctccaacattctgactaatgatctccaacccgacacgattcacaactacctaat |
111 |
Q |
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| T |
384409 |
gagaagaaggaagctattgatcataggaacaacggttcgaagtcacctccaacattccgactaatgatctccaatccgacacgattcacaactacctaat |
384508 |
T |
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| Q |
112 |
gataatttgaatataaacatcaacaacaacaacaaagtnnnnnnntaattgaggagttatgaagaactaaccgtaacaaaaatacgagctctgataacaa |
211 |
Q |
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| T |
384509 |
gataatttgaatataaacatcaacaacaacaacaaagtaaaaaaatagttgaggagttatgaagaactaactgtaacaaaaatacgagctctgataacaa |
384608 |
T |
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| Q |
212 |
gaggaaaagacacattagggttagcaaaatccctaaaaagccttcttaaaagaaacggaagatcacgtaatctctcagcaatactagcattagattgttc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
384609 |
gaggaaaagacacattagggttagcaaaatccctaaaaagccttcttaaaagaaacggaagatcacgtaatctctcagcaatactagcattagattgttc |
384708 |
T |
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| Q |
312 |
accaaaaagacgattatatttctgaatatcacccagaagac |
352 |
Q |
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| T |
384709 |
accaaaaagacgattatatttctgaatatcacccagaagac |
384749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 173 - 342
Target Start/End: Original strand, 389947 - 390116
Alignment:
| Q |
173 |
aagaactaaccgtaacaaaaatacgagctctgataacaagaggaaaagacacattagggttagcaaaatccctaaaaagccttcttaaaagaaacggaag |
272 |
Q |
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||||||||||||||| |||| ||||||||| ||||||||||||| ||| |||||||||| |||||||| ||||||||||| | |||||||| ||||| |
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| T |
389947 |
aagaactaaccgtaatgaaaacacgagctctaataacaagaggaagagaagtattagggttaacaaaatccttaaaaagccttttcaaaagaaaaggaag |
390046 |
T |
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| Q |
273 |
atcacgtaatctctcagcaatactagcattagattgttcaccaaaaagacgattatatttctgaatatca |
342 |
Q |
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| T |
390047 |
atcacgtaatctctgaacaatactagcattagattgttggccaaaaacacggttatatctttgaatatca |
390116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 389857 - 389908
Alignment:
| Q |
97 |
tcacaactacctaatgat--aatttgaatataaacatcaacaacaacaacaa |
146 |
Q |
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| T |
389857 |
tcacgactacctaatgatttaatttgaacataaacaacaacaacaacaacaa |
389908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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