View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8092_low_11 (Length: 348)
Name: NF8092_low_11
Description: NF8092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8092_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-172; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 16 - 335
Target Start/End: Complemental strand, 31561226 - 31560907
Alignment:
| Q |
16 |
attacatcctccaagccaaggtggatgaatccgcaaagtctagaga-tatgtgattgttcaagttgtacataggttgaagatagattctcgacagtgaat |
114 |
Q |
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| T |
31561226 |
attacatcctccaagccaaggtggatgaatccgcaaagtctagagaatatgtgattgttcaagttgtacataggttgaagatagattctcgacagtgaat |
31561127 |
T |
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| Q |
115 |
atcgtcttttgttggagggctgtaactgatattgagtaattgacactgccaaaatccagtaatgacggagaaaaaataaagcaaggacaaatataattca |
214 |
Q |
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| T |
31561126 |
atcgtcttttgttggagggctgtaactgatattgagtaattgacactgccaaaatccagtaatgacggagaaaaaa-aaagcaaggacaaatataattca |
31561028 |
T |
|
| Q |
215 |
agaacagaaagccgattcaattatctacggagatacaattgacataagttgaaaaatgtgtcctaaaaatatatatgtatcttgaacaatgatacaacca |
314 |
Q |
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| T |
31561027 |
agaacagaaagccgattcaattatctacggagatacaattgacataagttgaaaaatgtgtcctaaaaatatatatgtatcttgaacaatgatacaacca |
31560928 |
T |
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| Q |
315 |
aattctatattattcttgttc |
335 |
Q |
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| T |
31560927 |
aattctatattattcttgttc |
31560907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 78 - 329
Target Start/End: Complemental strand, 31559181 - 31558936
Alignment:
| Q |
78 |
ttgtacataggttgaagatagattctcgacagtgaatatcgtcttttgttggagggctgtaactgatattgagtaattgacactgccaaaatccagtaat |
177 |
Q |
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| T |
31559181 |
ttgtagataggctgaggatagatccgcgacagtgaatattgtcttctgttggagggctgtaactgatatttaataatttgcacagccaaaatccagtaat |
31559082 |
T |
|
| Q |
178 |
gacggagaaaaaataaagcaaggacaaatataattcaagaacagaaagccgattcaattatctacggagatacaattgacataagttgaaaaatgtgtcc |
277 |
Q |
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| T |
31559081 |
gatggggaaaaa-taaag-----acaaatataattcaagaatagaaggccaattcaattatctacagagatacatttgacataaaatgaaaaatgagtcc |
31558988 |
T |
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| Q |
278 |
taaaaatatatatgtatcttgaacaatgatacaaccaaattctatattattc |
329 |
Q |
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| T |
31558987 |
taaaaatatatatgtagcttgaacaatgatacaacctacttctatattattc |
31558936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 50 - 273
Target Start/End: Original strand, 31877529 - 31877754
Alignment:
| Q |
50 |
aaagtctagaga-tatgtgattgttcaagttgtacataggttgaagatagattctcgacagtgaatatcgtcttttgttggagggctgta--------ac |
140 |
Q |
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| T |
31877529 |
aaagtctagagaatatgtgattgtccaagttgtacataggttgaagatagtttcgcgacagtgaatatcgtcttctgttgtagggctgtaaccaatagac |
31877628 |
T |
|
| Q |
141 |
tgatattgagtaattgacactgccaaaatccagtaatgacggagaaaaaataaagcaaggacaaatataattcaagaacagaaagccgattcaattatct |
240 |
Q |
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| T |
31877629 |
tgatactgattaatttgcactgccaaaatccattaatgatggggaaaa-------taaggacaaatataattcaagaatagaatgccaattcaattatct |
31877721 |
T |
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| Q |
241 |
acggagatacaattgacataagttgaaaaatgt |
273 |
Q |
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| T |
31877722 |
acggagatacaattgacataagatgaaaaatgt |
31877754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 76 - 236
Target Start/End: Complemental strand, 31556173 - 31556020
Alignment:
| Q |
76 |
agttgtacataggttgaagatagattctcgacagtgaatatcgtcttttgttggagggctgtaactgatattgagtaattgacactgccaaaatccagta |
175 |
Q |
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| T |
31556173 |
agttgtacataggctgataatagatccgcgacagtgaatattgtcttcagttggagggctgtaactgatactgattaatttgcactgccaaaatccagta |
31556074 |
T |
|
| Q |
176 |
atgacggagaaaaaataaagcaaggacaaatataattcaagaacagaaagccgattcaatt |
236 |
Q |
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|||| | | ||||||||| ||||||||||||||||||| |||| ||| |||||||| |
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| T |
31556073 |
atgatg--ggaaaaataaa-----gacaaatataattcaagaatagaatgccaattcaatt |
31556020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 229 - 334
Target Start/End: Complemental strand, 31556000 - 31555903
Alignment:
| Q |
229 |
attcaattatctacggagatacaattgacataagttgaaaaatgtgtcctaaaaatatatatgtatcttgaacaatgatacaaccaaattctatattatt |
328 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||| |||||| |||||||||| ||||||||||||| ||||| | |||||||||||| |
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| T |
31556000 |
attcaattatctacaaagatacaattgacataa-------aatgtgttctaaaa-tatatatgtagcttgaacaatgatccaacctacttctatattatt |
31555909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 31852379 - 31852320
Alignment:
| Q |
118 |
gtcttttgttggagggctgtaactgatattgagtaattgacactgccaaaatccagtaat |
177 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31852379 |
gtcttctgttggagggcaataactgatattgagtaattgacactgcaaaaatccagtaat |
31852320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 31559280 - 31559210
Alignment:
| Q |
48 |
gcaaagtctagaga-tatgtgattgttcaagttgta----cataggttgaagatagattctcgacagtgaa |
113 |
Q |
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| T |
31559280 |
gcaaagtctagagaatatgtgattgtccaagttgtatgtacataggttgaagatagatccgcgacagtgaa |
31559210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 31877467 - 31877503
Alignment:
| Q |
16 |
attacatcctccaagccaaggtggatgaatccgcaaa |
52 |
Q |
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| T |
31877467 |
attacatcctccaagccaaggtggatgaatccacaaa |
31877503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 31559342 - 31559304
Alignment:
| Q |
14 |
caattacatcctccaagccaaggtggatgaatccgcaaa |
52 |
Q |
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||||||||||||| |||||||||||||||||||| |||| |
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| T |
31559342 |
caattacatcctctaagccaaggtggatgaatccacaaa |
31559304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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