View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8092_low_13 (Length: 311)
Name: NF8092_low_13
Description: NF8092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8092_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 33724080 - 33724219
Alignment:
| Q |
5 |
aaaaatcaaggggacttatctaacataaattcagtgtaaccacacacacgatttaaattttatgtatgcaaccatcgatcatcataattatctttaattt |
104 |
Q |
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| T |
33724080 |
aaaaatcaaggggacttatctaacataaattcagtgtaaccacacacacgatttaaattttatgtatgcaaccatcgatcatcataattatctttaattt |
33724179 |
T |
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| Q |
105 |
cttcttgttcaagttaatataatgataatgtcatgttaat |
144 |
Q |
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| T |
33724180 |
cttcttgttcaagttaatataatgataatgtcatgttaat |
33724219 |
T |
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Target: chr2; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 145 - 293
Target Start/End: Original strand, 33724291 - 33724432
Alignment:
| Q |
145 |
atctacaaatgtatgagattgcaagcaatgtagtgtgtcaatagtcaatactaatcaagagggataaactttatgtgagaatccatggaaaatgctagct |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33724291 |
atctacaaatgtatgagattgcaagcaatgtagtgtgtca-------atactaatcaagaggaataaactttatgtgagaatccatggaaaatgctagct |
33724383 |
T |
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| Q |
245 |
acctattataaaattgactaagcttttggtaaatgtacaaattcataaa |
293 |
Q |
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| T |
33724384 |
acctattataaaattgactaagcttttggtaaatgtacaaattcataaa |
33724432 |
T |
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