View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8092_low_14 (Length: 300)
Name: NF8092_low_14
Description: NF8092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8092_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 24509130 - 24509404
Alignment:
| Q |
18 |
agacgttgcgaggatattgttaagtgttggagcaagaaacggtgaacaagtcgtcgatgctccctcacttgcaaatcaactaagatcagataccacaatt |
117 |
Q |
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| T |
24509130 |
agacattgcgaggatattgttaagtgttggagcaagacacggtgaagaagtcgtcgatgctcccttacttgcaaatcaactaagatcagataccacaatt |
24509229 |
T |
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| Q |
118 |
atgaataaagtgacaatttatgttagtcgctttagaagtgaaatattagaggagcaacgcaacacttggttgattgttgcggcccttgttgcaacagcga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||| |
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| T |
24509230 |
atgaataaagtgacaatttatgttagtcgctttagaagtgaaatattagaggagcaacgcagcacttggttgattgttgcgaccctcgttgcaacagcga |
24509329 |
T |
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| Q |
218 |
cctatcaaacagtactaaatccccctggcggattttatcaaactaatgctaccaacaaaaatttgaacaccactt |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24509330 |
cctatcaaacagtactaaatccccctggcggattttatcaaactaatgctaccaacaaaaatttgaacaccactt |
24509404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 169 - 292
Target Start/End: Original strand, 29552745 - 29552868
Alignment:
| Q |
169 |
gagcaacgcaacacttggttgattgttgcggcccttgttgcaacagcgacctatcaaacagtactaaatccccctggcggattttatcaaactaatgcta |
268 |
Q |
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| T |
29552745 |
gagcaacgtaacactatgttgatagttgcagcccttgttgtgactgccacctatcaatcagtactaagtccccctggtggagtttatcaggttaatgcta |
29552844 |
T |
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| Q |
269 |
ccaacaaaaatttgaacaccactt |
292 |
Q |
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| T |
29552845 |
gtgacaaaaatttgaacatcactt |
29552868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 27714274 - 27714345
Alignment:
| Q |
144 |
tcgctttagaagtgaaatattagaggagcaacgcaacacttggttgattgttgcggcccttgttgcaacagc |
215 |
Q |
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| T |
27714274 |
tcgcattagaaatgatgtattagaggagcaacgcaacacttggatgatagttgcgactcttgttgcaacagc |
27714345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 257
Target Start/End: Original strand, 30648800 - 30648930
Alignment:
| Q |
127 |
gtgacaatttatgttagtcgctttagaagtgaaatattagaggagcaacgcaacacttggttgattgttgcggcccttgttgcaacagcgacctatcaaa |
226 |
Q |
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|||||||||||| | | |||| ||||| | || |||| |||||||||||| |||||||||||||| |||||| | |||||||| || || | ||||||| |
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| T |
30648800 |
gtgacaatttatataaatcgcattagaggagatatatcagaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaat |
30648899 |
T |
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| Q |
227 |
cagtactaaatccccctggcggattttatca |
257 |
Q |
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||| | | | ||||||||| ||| ||||||| |
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| T |
30648900 |
caggattgagtccccctggtggaatttatca |
30648930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 225
Target Start/End: Original strand, 4819858 - 4819923
Alignment:
| Q |
160 |
atattagaggagcaacgcaacacttggttgattgttgcggcccttgttgcaacagcgacctatcaa |
225 |
Q |
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|||| ||||||||||||||||||||||||||| |||||| | ||||||||||| || |||| |||| |
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| T |
4819858 |
atatcagaggagcaacgcaacacttggttgatagttgcgactcttgttgcaactgccacctttcaa |
4819923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 17292762 - 17292707
Alignment:
| Q |
170 |
agcaacgcaacacttggttgattgttgcggcccttgttgcaacagcgacctatcaa |
225 |
Q |
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| T |
17292762 |
agcaacgcaacacttggttgataattgcgactcttgttgcaacagccacctatcaa |
17292707 |
T |
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