View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8092_low_16 (Length: 288)
Name: NF8092_low_16
Description: NF8092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8092_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 25869933 - 25870179
Alignment:
| Q |
15 |
gagatgaaaggtggagataaaaattggtccgatgatcaatacaggatgaagaagaagcgtaaggaattgggtggggaatcatcatcatcnnnnnnnnnnn |
114 |
Q |
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| T |
25869933 |
gagatgaaaggtggagataaaaattggtccgatgatcaatacaggatgaagaagaagcgtaaggaattgggtggggaatcatcatcatccaacaaca--- |
25870029 |
T |
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| Q |
115 |
nnnnnnttgcgcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtcaatggagagg |
214 |
Q |
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| T |
25870030 |
------ttgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtcaatggagagg |
25870123 |
T |
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| Q |
215 |
cattaaccctcctcctaatttcagaagacaacaacaactacttgtgactccagaag |
270 |
Q |
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| T |
25870124 |
cattaaccctcctcctaatttcagaagacaacaacaacaacttgtgactccagaag |
25870179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 121 - 249
Target Start/End: Original strand, 43383309 - 43383437
Alignment:
| Q |
121 |
ttgcgcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtcaatggagaggcattaa |
220 |
Q |
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| T |
43383309 |
ttgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggagaggcattaa |
43383408 |
T |
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| Q |
221 |
ccctcctcctaatttcagaagacaacaac |
249 |
Q |
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| T |
43383409 |
ccctccacctaatttcagaagacaacaac |
43383437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 43383170 - 43383207
Alignment:
| Q |
15 |
gagatgaaaggtggagataaaaattggtccgatgatca |
52 |
Q |
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| T |
43383170 |
gagatgaaaggtggagataaaaattggtccgatgatca |
43383207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 43383254 - 43383294
Alignment:
| Q |
63 |
aagaagaagcgtaaggaattgggtggggaatcatcatcatc |
103 |
Q |
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| T |
43383254 |
aagaagaagagtaaggaattgggtggggaatcatcatcatc |
43383294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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