View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8092_low_17 (Length: 285)
Name: NF8092_low_17
Description: NF8092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8092_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 1744344 - 1744607
Alignment:
| Q |
1 |
aagccaataagaagctcaaataatactttcgatattccattttttgaatgatcctgagttggctatcaccaagggcactatttatagcctctgatgaagc |
100 |
Q |
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| T |
1744344 |
aagccaataagaagctcaaataatactttcgatattccattttttgaatgatcctgagttggctatcaccaagggcactatttatagcctctgatgaagc |
1744443 |
T |
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| Q |
101 |
tttaaaatattgatcaataatatttttaaattaatgttgctccacattctcttattcttatttcctagtgtcaagatggatgcctacaaaaaatgcatga |
200 |
Q |
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| T |
1744444 |
tttaaaatattgatcaataatatttttaaattaatgttgctccacattgtcttattcttatttcctagtgtcaagatggatgcctactaacaatgcatga |
1744543 |
T |
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| Q |
201 |
ttttaatattttaaccaaaatcaggggcggagctaggttttatacatcgggggaccaagtctta |
264 |
Q |
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| T |
1744544 |
ttttaatattttaaccaaaatcaggggcggagctaggttttatacatcgggggaccaagtctta |
1744607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 1722235 - 1722425
Alignment:
| Q |
1 |
aagccaataagaagctcaaataatactttcgatattccattttttgaatgatcctgagttggctatca--------ccaagggcactatttatagcctct |
92 |
Q |
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| T |
1722235 |
aagccaataagaagctcaaataatactttcgatattccattttttgaatgatccttagttggctataaaacgagtaccaagggcactatatatagccttt |
1722334 |
T |
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| Q |
93 |
gatgaagctttaaaatattgatcaataata-tttttaaattaatgttgctccacattctcttattcttatttcctagtgtcaagatggatg |
182 |
Q |
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| T |
1722335 |
gatgatgctttaaaatattgatcaataataatttttaaattaatgttgctccacattctcttcttcctatttcctaatctcaagatggatg |
1722425 |
T |
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