View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8092_low_20 (Length: 272)
Name: NF8092_low_20
Description: NF8092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8092_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 30854448 - 30854366
Alignment:
| Q |
25 |
catgcatggacaaattaagctggaatctttagacagctagctttagtctatcaccataatatgtgtcttgtcattttgtaaac |
107 |
Q |
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| T |
30854448 |
catgcatggacaaattaagctggaatctttagacagctagctttagtctatcaccataatatgtgtcttgtcattttgtaaac |
30854366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 30854288 - 30854245
Alignment:
| Q |
185 |
catgttgtgtcttgcaagttttcctccttaatattttgttcaat |
228 |
Q |
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| T |
30854288 |
catgttgtgccttgcaagttttcctccttaatattttgttcaat |
30854245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 30878647 - 30878581
Alignment:
| Q |
25 |
catgcatggacaaattaagctggaatct--ttagacagctagctttagtctatcaccataatatgtg |
89 |
Q |
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| T |
30878647 |
catgcatggacaaattaagctagaatctctttagatagctagctctagtttatcaccataatatgtg |
30878581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 15064233 - 15064309
Alignment:
| Q |
25 |
catgcatggacaaattaagctggaatctttagacagctagctttagtctatcaccataatatgtgtcttgtcatttt |
101 |
Q |
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| T |
15064233 |
catgcatggacaaattaagctagaatctctcaacaactagctctagtatatctccataatatgtgtcttgtcatttt |
15064309 |
T |
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