View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8092_low_23 (Length: 256)
Name: NF8092_low_23
Description: NF8092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8092_low_23 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 143 - 256
Target Start/End: Original strand, 38448758 - 38448871
Alignment:
| Q |
143 |
ttggaactcattattattgattcctaatcatcctttatttccatgtcatcaaaatggtttctattagcgtacattccaaagtcatttcgaagcttctgat |
242 |
Q |
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| T |
38448758 |
ttggaactcattattattgattcctaatcatcctttatttccatgtcatcaaaatggtttctattagcgtaaattccaaagtcatttccaagcttctgat |
38448857 |
T |
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| Q |
243 |
ttaagaatgttact |
256 |
Q |
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| T |
38448858 |
ttaagaatgttact |
38448871 |
T |
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Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 38448574 - 38448673
Alignment:
| Q |
29 |
atgtcagtattctttttccttcaccttattgcttattaaatgtgaattattatgctttatggtcatactattgtggctgctgagaaggaaaaatcatggc |
128 |
Q |
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| T |
38448574 |
atgtcagtattctttttccttcaccttattgcttattaaatgtgaattattatgctttatggtcatactattgtggctgctgagaaggaaaaatcatggc |
38448673 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 38448087 - 38448130
Alignment:
| Q |
212 |
tacattccaaagtcatttcgaagcttctgatttaagaatgttac |
255 |
Q |
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| T |
38448087 |
tacattctaaagtcatttcaaagcttctgttttaagaatgttac |
38448130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 38550182 - 38550139
Alignment:
| Q |
212 |
tacattccaaagtcatttcgaagcttctgatttaagaatgttac |
255 |
Q |
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| T |
38550182 |
tacattctaaagtcatttcaaagcttctgttttaagaatgttac |
38550139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 53350759 - 53350702
Alignment:
| Q |
17 |
actttatgcactatgtcagtattctttt-tccttcaccttattgcttattaaatgtga |
73 |
Q |
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| T |
53350759 |
actttatgcaatatgccagtttttttttctccttcacgttattgcttattaaatgtga |
53350702 |
T |
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