View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8092_low_24 (Length: 254)
Name: NF8092_low_24
Description: NF8092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8092_low_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 38187552 - 38187315
Alignment:
| Q |
1 |
ataagaatttcaaggtcatgaaggagaaatcgatgtctaaatggaagaaaactatcatcgagaagtataactatgtagctctgaaggacccacttccaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38187552 |
ataagaatttcaaggtcatgaaggagaaatcgatgtctcaatggaagaaaactatcatagagaagtataactatgtagctctgaaggacccacttccaag |
38187453 |
T |
|
| Q |
101 |
agaacttctgctgggtcagagtgagaggcaaattctgtatgatcgcgctggtagaattattaagggagaggtaagacatgcattctatatatttattgcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38187452 |
agaacttctgctgggtcagagtgagaggcaaattctgtatgatcgcgctggtagaattattaagggagaggtaagacatgcattctatatatttattgcc |
38187353 |
T |
|
| Q |
201 |
tcataatttgaagttgcatatcagtcttgcactaaatg |
238 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
38187352 |
tcataatttcaagttgcatatcagtcttacactaaatg |
38187315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 38923351 - 38923578
Alignment:
| Q |
1 |
ataagaatttcaaggtcatgaaggagaaatcgatgtctaaatggaagaaaactatcatcgagaagtataactatgtagctctgaaggacccacttccaag |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||| || |||| || ||| | ||||| || ||||||||| | ||| |||| ||||| ||||||||| |
|
|
| T |
38923351 |
ataaaaatttcaaggtcatgaaggagaaattgaagtctcaaacaaaggacactattattgagaagtatggcaatgcagctgacgaggacaaacttccaag |
38923450 |
T |
|
| Q |
101 |
agaacttctgctgggtcagagtgagaggcaaattctgtatgatcgcgctggtagaattattaagggagaggtaagacatgcattctatatatttattgcc |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||| || ||||||||| |||||||||||| |||||||| |||||||| ||||||||||||| |||||| | |
|
|
| T |
38923451 |
agaacttcttctgggtcagagtgagaggcaagttgagtatgatcgtgctggtagaattgttaagggacaggtaagaaatgcattctatatctttattatc |
38923550 |
T |
|
| Q |
201 |
tcataatttgaagttgcatatcagtctt |
228 |
Q |
| |
|
||| ||||| || |||||||||| |||| |
|
|
| T |
38923551 |
tcacaatttcaatttgcatatcaatctt |
38923578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University