View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8092_low_3 (Length: 470)
Name: NF8092_low_3
Description: NF8092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8092_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 52092730 - 52092466
Alignment:
| Q |
1 |
agtgaggcacgtagtagaaaactgcacacgattgagagagataaatatacgaggttgtcgtgaggtgtgtgttgatgttaatttctggacgatgatggta |
100 |
Q |
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| T |
52092730 |
agtgaggcacgtagta-aaaactgcacacgattgagagagataaatatacgaggttgtcgtgaggtgtgtgttgatgttaatttctggacgatgatggta |
52092632 |
T |
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| Q |
101 |
ttttcaaggtcatcattgaga----aagattatggctccctctcannnnnnnncctagtgacgacaagtggaaacctttattgaaaccatggatgccttg |
196 |
Q |
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| T |
52092631 |
ttttcaaggtcatcattgagaaattaagattatggctccctctcatttttg----tagtgacgacaagtggaaacctttattg-aaccatggatgccttg |
52092537 |
T |
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| Q |
197 |
ttttctagtattctgaaagtgataaaacagttatttgaaatgttatctccatcacaacatttcaatcttca |
267 |
Q |
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| T |
52092536 |
ttttctagtattctgaaagtgataaaacagttatttgaaatgttatcttcatcacaacatttcaatcttca |
52092466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 6 - 265
Target Start/End: Complemental strand, 52082529 - 52082272
Alignment:
| Q |
6 |
ggcacgtagtagaaaactgcacacgattgagagagataaatatacgaggttgtcgtgaggtgtgtgttgatgttaatttctggacgatgatggtattttc |
105 |
Q |
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| T |
52082529 |
ggcacgtagtagaaaactgcacacgactgagagagataaatttgtgggattgtcataatgtgtgtgctgatgttaatttctggatggtgatggtaatttt |
52082430 |
T |
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| Q |
106 |
aaggtcatcattgagaaagattatggctccctctcannnnnnnncctagtgacgacaagtggaaacctttattgaaaccatggatgccttgttttctagt |
205 |
Q |
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| T |
52082429 |
aaggtcatcattgagaaaaattatggctccctctcatttttgt-cctagtgacgacaagtggaaacctttattgaa-ccttggatgccttgttttctagt |
52082332 |
T |
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| Q |
206 |
attctgaaagtgataaaacagttatttgaaatgttatctccatcacaacatttcaatctt |
265 |
Q |
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| T |
52082331 |
attctgaaagtgataaaactattatttgaaatgttatcttcatcacaacatttcaatctt |
52082272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 296 - 456
Target Start/End: Complemental strand, 52092437 - 52092277
Alignment:
| Q |
296 |
catgacatatattaaagaattgtagtttggttgatgatgannnnnnnctaacatttacaaggccaactccaagaacaatatcacactttctggttttggt |
395 |
Q |
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| T |
52092437 |
catgacatatattaaagaattgtagtttggttgatgatgatttttttctaacatttacaaggccaactccaagaacaatatcacactttctggttttggt |
52092338 |
T |
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| Q |
396 |
gattattattgattgattagaagtaaaggaaacccattaagtatcttgtttgtggagatag |
456 |
Q |
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| T |
52092337 |
gattattattgattgattagaagtaaaggaaacccattaagtatcttgtttgtggagatag |
52092277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 343 - 428
Target Start/End: Complemental strand, 52082190 - 52082105
Alignment:
| Q |
343 |
ctaacatttacaaggccaactccaagaacaatatcacactttctggttttggtgattattattgattgattagaagtaaaggaaac |
428 |
Q |
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| T |
52082190 |
ctaacatttacaaggtaatctccaagaacaatatcgcacattctgggtatggtgattattattgattgattagaagtaaaggaaac |
52082105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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