View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8092_low_31 (Length: 212)
Name: NF8092_low_31
Description: NF8092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8092_low_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 33139482 - 33139301
Alignment:
| Q |
11 |
gagatgaagaacaataaaaagaaatatagcagctttatatgcctcaaagtggtttaattgttcaaacttgagagtgttctatgaacttcattcaaaaagt |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33139482 |
gagaagaagaacaataaaaagaaatatagcagctttatatgcctcaaagtggttcaattgttcaaacttgagagtgttctatgaacttcattcaaaaagt |
33139383 |
T |
|
| Q |
111 |
acctagtattaactcttgcattggtagaagaggcacatgctgaagatgaagctgaaattacagatgaacttttaggtagtga |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33139382 |
acctagtattaactcttgcattggtagaagaggcacatgctgaagatgaagctgaaattacagatgaacttttaggtagtga |
33139301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 33143104 - 33142986
Alignment:
| Q |
72 |
tcaaacttgagagtgttctatgaacttcattcaaaaagtacctagtattaactcttgcattggtag---aagaggcacatgctgaagatgaagctgaaat |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| |||| | |||||||||||| |||| |||||||| |||||| |||||||||| |
|
|
| T |
33143104 |
tcaaacttgagagtgttctatgaacttcattcagaaagtacctagtgttaattgttgcattggtagaagaagatgcacatgcagaagataaagctgaaat |
33143005 |
T |
|
| Q |
169 |
tacagatgaacttttaggt |
187 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
33143004 |
tgcagatgaacttttaggt |
33142986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 32349906 - 32349990
Alignment:
| Q |
71 |
ttcaaacttgagagtgttctatgaacttcattcaaaaagtacctagtattaactcttgcattggtagaagaggcacatgctgaag |
155 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||| |||||| |||||||||||||||||||||||| |||| |
|
|
| T |
32349906 |
ttcaaacttgagagtgttctatgaacttccttcaggaagtacctagaattaacaactgcattggtagaagaggcacatgcagaag |
32349990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 145
Target Start/End: Original strand, 32342783 - 32342857
Alignment:
| Q |
71 |
ttcaaacttgagagtgttctatgaacttcattcaaaaagtacctagtattaactcttgcattggtagaagaggca |
145 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||| ||| || ||||| |||||||||||||||||||| |
|
|
| T |
32342783 |
ttcaaacttgagagtgttctatgaacttccttcaggaagtccctggtgttaacagttgcattggtagaagaggca |
32342857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University