View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8093_high_4 (Length: 444)
Name: NF8093_high_4
Description: NF8093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8093_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 7 - 437
Target Start/End: Original strand, 47049110 - 47049540
Alignment:
| Q |
7 |
gtacactgtcagacagaagaatttagcactccattgtatccaacattagctgctaatatagacattatggtattggttaattttggacaaaatgcattta |
106 |
Q |
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| T |
47049110 |
gtacactgtcagacagaagaatttagcactccattgtatccaacattagctgctaatatagacattatggtattggtcaattttggacaaaatgcattta |
47049209 |
T |
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| Q |
107 |
aatatgcaccagcaaatgctcaaagaacaccaaatccatgccttgtatcaccacttgtaagttctcctgctgccataggttacgacgatgatagcaaaga |
206 |
Q |
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| T |
47049210 |
aatatgcaccagcaaatgctcaaagaacaccaaatccatgccttgtatcaccacttgtaagttctcctgctgccataggttacgacgatgatagcaaaga |
47049309 |
T |
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| Q |
207 |
attattctccatgggtaggattgattctcattggcttaataggactacaaccaaaggaagccacaacaatgggaacaatatttcaaccatggattttgat |
306 |
Q |
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| T |
47049310 |
attattctccatgggtaggattgattctcattggcttaataggactacaaccaaaggaagccacaacaatgggaacaatatttcaaccatggattttgat |
47049409 |
T |
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| Q |
307 |
gaagagtctgaggctgatttgtttgaaatcgtcatagatggttctagaaaatctccaagtacaacatcatagcttacaacaaattgtgcccaagttgtct |
406 |
Q |
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| T |
47049410 |
gaagagtctgaggctgatttgtttgaaatcgtcatagatggttctagaaaatctccaagtacaacatcatagcttacaacaaattgtgcccaagttgtct |
47049509 |
T |
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| Q |
407 |
tggttctggcatttaacaaccttctctgctt |
437 |
Q |
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| T |
47049510 |
tggttctggcatttaacaaccttctttgctt |
47049540 |
T |
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Back To:
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Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 10 - 165
Target Start/End: Complemental strand, 5655381 - 5655226
Alignment:
| Q |
10 |
cactgtcagacagaagaatttagcactccattgtatccaacattagctgctaatatagacattatggtattggttaattttggacaaaatgcatttaaat |
109 |
Q |
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|||||||| |||| ||||| ||||||||||| | |||||| || ||||| ||||||||||||||||| || |||||||||||||||| |||||| |||| |
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| T |
5655381 |
cactgtcaatcagaggaattcagcactccattatgtccaactttggctgcaaatatagacattatggttttagttaattttggacaaattgcattcaaat |
5655282 |
T |
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| Q |
110 |
atgcaccagcaaatgctcaaagaacaccaaatccatgccttgtatcaccacttgta |
165 |
Q |
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|||| || |||||||| ||||||||||||||||||||| | || ||||||||||| |
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| T |
5655281 |
atgctcctgcaaatgcacaaagaacaccaaatccatgcttcatagcaccacttgta |
5655226 |
T |
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