View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8093_low_1 (Length: 1093)
Name: NF8093_low_1
Description: NF8093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8093_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 898; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 898; E-Value: 0
Query Start/End: Original strand, 14 - 1075
Target Start/End: Original strand, 35071611 - 35072714
Alignment:
| Q |
14 |
atggacatcaataataattgaaaaataacataattccgtagaatcacatgtgtggtggacatcaacacgtaggtgctttatctaacccgtattaatgctt |
113 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
35071611 |
atggacattaataataattgaaaaataacataattccgtagaatcacatgtgtggtggacatcaacacgtaggtgctttatctaactcgtattaatgctt |
35071710 |
T |
|
| Q |
114 |
atgatacacacacgtttcttatttgtaacagcatttcctaatcactaacatacaaaaacaaatagccaaaatggaacatttttggattcaaatttcaa-- |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35071711 |
atgatacacacacgtttcttatttgtaacagcatttcctaatcactaacatacaaaaacaaatagccaaaatggaacatttttggattcaaatttcaatc |
35071810 |
T |
|
| Q |
212 |
-------------cttttcataattactctcactgtgaactctgattggtcaaacgatcagggttggtaacctcttccttagggacagtaacagtaagaa |
298 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35071811 |
cacacgaacagaactgttcattattactctcactgtgaactctgattggtcaaacgatcagggttggtaacctcttccttagggacagtaacagtaagaa |
35071910 |
T |
|
| Q |
299 |
caccatcttcaatagaagccttaacctgatccaatttacagttagctggaagagtaaaactcctcatgaatttaccactactacgctcaacacgctgaca |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35071911 |
caccatcttcaatagaagccttaacctgatccaatttacagttagctggaagagtaaaactcctcatgaatttaccactactacgctcaacacgctgaca |
35072010 |
T |
|
| Q |
399 |
tccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccct |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35072011 |
tccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccct |
35072110 |
T |
|
| Q |
499 |
ggtacatcagctttgaatacatgggcttctggagtttccttccaatcaatctggttgttgaggaaaattggattttctcgtgaaaattcttggattgaag |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35072111 |
ggtacatcagctttgaatacatgggcttctggagtttccttccaatcaatctggttgttgaggaaaattggattttctcgtgaaaattcttggattgaag |
35072210 |
T |
|
| Q |
599 |
tagagaatggggaattctcaaaagggatgttgttgcctggtatcatagacattttgttgtgagattaaaatattgcagagattgtgttatgttgtagaga |
698 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35072211 |
tagagaatggggaattctcaaaagggctgttgttgcctggtatcatagacattttgttgtgagattaaaatattgcagagattgtgttatgttgtagaga |
35072310 |
T |
|
| Q |
699 |
catgttctgtcttatttgaagttgttttggaaggtgaagagaattctccgtaaacggacataattagatgtctccattcttaggatgttttacttgatct |
798 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
35072311 |
catgttctgtcttatttgaagttgttttggaaggtgaggagaattctccgtaaacggacataattagatgtctccattcttaggatattctacttgatct |
35072410 |
T |
|
| Q |
799 |
ttgtggaatttatgttatgctattattaactcttgtgtataaatagaatacaat---accaatacttaaaatagacataaaaaacgatgtgagacaatag |
895 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35072411 |
ttgtggaatttatgttatgctattattaactcttgtgtataaatagaatacaataccaccaatacttaaaatagacataaaaaacgatgtgagacaatat |
35072510 |
T |
|
| Q |
896 |
atgataattaaaccatt----------------cttacaatagataattcacattactgaatttacttttacataaaacagatacgcattacaatgaaac |
979 |
Q |
| |
|
||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35072511 |
atgataattaaaccattcttacataatttattccttacaaaatataattcacattactgaatttacttttacataaaacagatacgcattacaatgaaac |
35072610 |
T |
|
| Q |
980 |
aga--------acgtacactgcacactattctcaacccaaaaacagagtaatagagcttggatatgtgttcaaccagagatttcgatggacttaacatca |
1071 |
Q |
| |
|
||| || ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35072611 |
agaacacacacacacacacttcacactattctcaacccaaaaacagagtaatagagcttgaatatgtgttcaaccagagatttcgatggacttaacatca |
35072710 |
T |
|
| Q |
1072 |
ggtt |
1075 |
Q |
| |
|
|||| |
|
|
| T |
35072711 |
ggtt |
35072714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 353 - 549
Target Start/End: Original strand, 35072805 - 35073001
Alignment:
| Q |
353 |
taaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcac |
452 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||| ||||| || ||| |||||| |||||| | | || ||| ||||||| || |||||||||| || |
|
|
| T |
35072805 |
taaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaatgttcctctcaccgcttatctgaagaac |
35072904 |
T |
|
| Q |
453 |
tcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttccttccaatcaatc |
549 |
Q |
| |
|
|| ||||||||| ||||| ||||||||||| || ||||| || || | |||||| ||||| ||||| |||||||| || ||||||||||||||| |
|
|
| T |
35072905 |
cctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctccttccaatcaatc |
35073001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 353 - 549
Target Start/End: Complemental strand, 35107055 - 35106859
Alignment:
| Q |
353 |
taaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcac |
452 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||| ||||| || ||| |||||| |||||| | | || | | ||||||| || |||||||||| || |
|
|
| T |
35107055 |
taaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaaagttcctctcaccgcttatctgaagaac |
35106956 |
T |
|
| Q |
453 |
tcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttccttccaatcaatc |
549 |
Q |
| |
|
|| ||||||||| ||||| ||||||||||| || ||||| || || | |||||| ||||| ||||| |||||||| || ||||||||||||||| |
|
|
| T |
35106955 |
cctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctccttccaatcaatc |
35106859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 428 - 549
Target Start/End: Original strand, 36296653 - 36296774
Alignment:
| Q |
428 |
tcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttc |
527 |
Q |
| |
|
|||||||||| | |||||||| ||||| ||||||||| ||||| |||||||| || || ||||| || || | ||||||||| || || || ||||| |
|
|
| T |
36296653 |
tcctctctccactaatctgaagaactctgtcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagctttaaacacgtgtgcttc |
36296752 |
T |
|
| Q |
528 |
tggagtttccttccaatcaatc |
549 |
Q |
| |
|
||| || ||||||||||||||| |
|
|
| T |
36296753 |
tggggtctccttccaatcaatc |
36296774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1039 - 1073
Target Start/End: Complemental strand, 35098004 - 35097970
Alignment:
| Q |
1039 |
gttcaaccagagatttcgatggacttaacatcagg |
1073 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35098004 |
gttcaaccagagatttcaatggacttaacatcagg |
35097970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1039 - 1073
Target Start/End: Complemental strand, 35098293 - 35098259
Alignment:
| Q |
1039 |
gttcaaccagagatttcgatggacttaacatcagg |
1073 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35098293 |
gttcaaccagagatttcaatggacttaacatcagg |
35098259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 5e-68; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 786 - 1075
Target Start/End: Original strand, 24013928 - 24014213
Alignment:
| Q |
786 |
ttttacttgatctttgtggaatttatgttatgctattattaactcttgtgtataaatagaatacaataccaatacttaaaatagacataaaaaacgatgt |
885 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24013928 |
ttttacttgatccttgtggaatttatgttatgctattattaactcttgtgtataaatagaatacaataccaatacttaaaatagacataaaaaacgatgt |
24014027 |
T |
|
| Q |
886 |
gagacaatagatgataattaaaccatt----------------cttacaatagataattcacattactgaatttacttttacataaaacagatacgcatt |
969 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| | |||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
24014028 |
gagacaatagat---aattaaaccattcttacataatttattccttacaaaatataattcaca-----gaatttacttttacataaaacaga-acgcac- |
24014117 |
T |
|
| Q |
970 |
acaatgaaacagaacgtacactgcacactattctcaacccaaaaacagagtaatagagcttggatatgtgttcaaccagagatttcgatggacttaacat |
1069 |
Q |
| |
|
||| ||| ||||| |||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24014118 |
--------acacaac--acacttcacaatattctcaacctaaaaacagagtaatagagcttgaatatgtgttcaaccagagatttcgatggacttaacat |
24014207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 353 - 545
Target Start/End: Original strand, 24040861 - 24041053
Alignment:
| Q |
353 |
taaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcac |
452 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||| ||||| || ||| |||||| |||||| | | || | | ||||||| || |||||||||| || |
|
|
| T |
24040861 |
taaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttcctctcaccgcttatctgaagaac |
24040960 |
T |
|
| Q |
453 |
tcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttccttccaatc |
545 |
Q |
| |
|
|| ||||||||| ||||| |||||||| || || ||||| || || | |||||| ||||| ||||| |||||||| || ||||||||||| |
|
|
| T |
24040961 |
cctatcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagccttgaacacatgtgcttctggggtctccttccaatc |
24041053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 428 - 549
Target Start/End: Original strand, 24014379 - 24014500
Alignment:
| Q |
428 |
tcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttc |
527 |
Q |
| |
|
|||||||||| |||||||||| || || || |||||| ||||| ||||||||||| || ||||| || || | |||||| ||||| ||||| ||||| |
|
|
| T |
24014379 |
tcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgtgcttc |
24014478 |
T |
|
| Q |
528 |
tggagtttccttccaatcaatc |
549 |
Q |
| |
|
||| || ||||||||||||||| |
|
|
| T |
24014479 |
tggggtctccttccaatcaatc |
24014500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 336
Target Start/End: Complemental strand, 34919235 - 34919170
Alignment:
| Q |
271 |
tcttccttagggacagtaacagtaagaacaccatcttcaatagaagccttaacctgatccaattta |
336 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||| || ||| ||| ||||||||||||| |||| |
|
|
| T |
34919235 |
tcttccttaggaacagtaacagtaagaaccccattctccataccagctttaacctgatccatttta |
34919170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 458 - 539
Target Start/End: Complemental strand, 3123163 - 3123082
Alignment:
| Q |
458 |
catcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttcctt |
539 |
Q |
| |
|
||||||||| ||||| ||||| || || || |||| |||||| | |||||||||||| ||||| |||||| |||||||||| |
|
|
| T |
3123163 |
catcttcaatttcaaccttcacctcttccttcttcaaccctggaagatcagctttgaacacatgtgcttctagagtttcctt |
3123082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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