View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8093_low_10 (Length: 299)
Name: NF8093_low_10
Description: NF8093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8093_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 113 - 284
Target Start/End: Complemental strand, 2746703 - 2746532
Alignment:
| Q |
113 |
aaacaatacatacaatcaaataatatccatccatataaaaacagaaaccatacctagagcagctagctgttgcttccttccacttcccggtggccgtcct |
212 |
Q |
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| T |
2746703 |
aaacaatacatacaatcaaataatatccatccatataaaaacagaaaccatacctagagcagctagctgttgcttccttccacttcccggtggccgtcct |
2746604 |
T |
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| Q |
213 |
ctcggccgtttctccgaatcaggagtagaattagcagtggcagacataggagaaagtctcaaagaaacaggt |
284 |
Q |
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| T |
2746603 |
ctcggccgtttctccgaatcaggagtagaattagcagtggcagacataggagaaagtctcaaagaaacaggt |
2746532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 2746814 - 2746770
Alignment:
| Q |
2 |
acatcaaggaccaattcttgaggtccaaagtatattttttctagt |
46 |
Q |
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| T |
2746814 |
acatcaaggaccaattcttgaggtccaaagtatattttttctagt |
2746770 |
T |
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