View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8093_low_11 (Length: 298)
Name: NF8093_low_11
Description: NF8093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8093_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 44 - 279
Target Start/End: Original strand, 34409141 - 34409376
Alignment:
| Q |
44 |
ttttgcttttattggactatatgaaaaataggggtccgggttcagttatcctgataatgtcatggataatcacattgttcactctatggcaaatggttga |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34409141 |
ttttgcttttattggactatatgaaaaataggggtccgggttcagttatcctgataatgtcatggataatcacattgttcactctatggcaaatggttga |
34409240 |
T |
|
| Q |
144 |
aatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatgcttttggaccaaaattgggtctatatatcattgttccacaa |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34409241 |
aatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatgcttttggaccaaaattgggtctatatatcattgttccacaa |
34409340 |
T |
|
| Q |
244 |
caactactcgttgaggttggtacatgtattgcttat |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
34409341 |
caactactcgttgaggttggtacatgtattgcttat |
34409376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 43853134 - 43853220
Alignment:
| Q |
103 |
tcatggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgag |
189 |
Q |
| |
|
|||||||||||||| | | |||||||||||||||||||||||||||||||||||| ||||||| | | ||||| ||||| |||||| |
|
|
| T |
43853134 |
tcatggataatcaccctctacactctatggcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatgag |
43853220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 230
Target Start/End: Complemental strand, 7979508 - 7979381
Alignment:
| Q |
103 |
tcatggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatg |
202 |
Q |
| |
|
|||||||| |||||||| | ||| || |||||||||||||| |||||||||||||| || |||| | | ||||| || || ||||| | |||||||||| |
|
|
| T |
7979508 |
tcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttccgggaaaacgctttgatagataccatgaattaggtcaacatg |
7979409 |
T |
|
| Q |
203 |
cttttggaccaaaattgggtctatatat |
230 |
Q |
| |
|
||||||| |||||| ||||| ||||| |
|
|
| T |
7979408 |
cttttgggaaaaaattaggtctttatat |
7979381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 248
Target Start/End: Complemental strand, 14198905 - 14198760
Alignment:
| Q |
103 |
tcatggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatg |
202 |
Q |
| |
|
|||||| | |||||||| | ||| |||||||||||||||| |||||||||||||| || || | | | || || || |||||||| || |||||| ||| |
|
|
| T |
14198905 |
tcatggttcatcacattatacacgttatggcaaatggttgagatgcatgaaatggtacccgggaaacgtttcgatagatatcatgaactgggtcaatatg |
14198806 |
T |
|
| Q |
203 |
cttttggaccaaaattgggtctatatatcattgttccacaacaact |
248 |
Q |
| |
|
||||||| ||| |||||||| ||||| |||| ||||||||||| |
|
|
| T |
14198805 |
cttttggtgaaaagttgggtctgtatattgttgtgccacaacaact |
14198760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 38827460 - 38827385
Alignment:
| Q |
123 |
cactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaa |
198 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||| || || |||| ||||| || |||||||||||| | |||||| |
|
|
| T |
38827460 |
cactatatggcaaatggttgagatgcatgaaatagttcccggaaagagattggataggtatcatgagttgggtcaa |
38827385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 42986447 - 42986374
Alignment:
| Q |
115 |
acattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatga |
188 |
Q |
| |
|
||||||| |||| |||||||||| |||||||||||||| || |||||| ||||||||||| ||||||||| |
|
|
| T |
42986447 |
acattgtacactgcatggcaaatgattgaaatgcatgaatccgtatcaggaaaaagatttgacaagtatcatga |
42986374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University