View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8093_low_12 (Length: 285)
Name: NF8093_low_12
Description: NF8093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8093_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 36 - 275
Target Start/End: Complemental strand, 43323248 - 43322986
Alignment:
| Q |
36 |
gttcatacaactctaatcaacatgactctgtataaaacggataaaagctagctagcagatgattcaaac--------------aaatgtgtaattataga |
121 |
Q |
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| T |
43323248 |
gttcatacaactctaatcaacatgactctgtataaaacggataaaagctagctagcagatgattcaaaccagatgattcaaacaaatctgtaattataga |
43323149 |
T |
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| Q |
122 |
tattcatagacaaaatgatattgtttacaaagtacaaatcccattgtcatataccacttgggtttaaaagag---------nnnnnnnnctaatttattc |
212 |
Q |
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| T |
43323148 |
tattcataaacaaaatgatattgtttacaaagtacaaatcccattgtcatataccacttgggtttaaaagagaaaaaaaaaaaaaaaaactaatttattc |
43323049 |
T |
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| Q |
213 |
ctccaattggaagcatgttttccttgtaaattcctatatgacaattctctcctttaacaccaa |
275 |
Q |
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| T |
43323048 |
ctccaattggaagcatgttttccttgtaaattcctatatgacaattctctcctttaacaccaa |
43322986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 41228180 - 41228119
Alignment:
| Q |
205 |
atttattcctccaattggaagcatgttttccttgtaaattcctatatgacaattctctcctt |
266 |
Q |
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| T |
41228180 |
atttattccaccaattggaagaaggtcttccttgtaaactgctatatgacaatattctcctt |
41228119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 42783495 - 42783431
Alignment:
| Q |
205 |
atttattcctccaattggaagcatgttttccttgtaaattcctatatgacaattctctcctttaa |
269 |
Q |
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| T |
42783495 |
atttattccaccaattggaagaaggtcttccttgtaaactgctatattacaatattctcctttaa |
42783431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 42446604 - 42446571
Alignment:
| Q |
207 |
ttattcctccaattggaagcatgttttccttgta |
240 |
Q |
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| T |
42446604 |
ttattcctccaattggaagaatgttttccttgta |
42446571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 9593586 - 9593619
Alignment:
| Q |
207 |
ttattcctccaattggaagcatgttttccttgta |
240 |
Q |
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| T |
9593586 |
ttattcctccaattggaagaatgttttccttgta |
9593619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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