View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8093_low_13 (Length: 264)

Name: NF8093_low_13
Description: NF8093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8093_low_13
NF8093_low_13
[»] chr3 (7 HSPs)
chr3 (1-245)||(20016657-20016901)
chr3 (87-216)||(19811728-19811854)
chr3 (87-216)||(19837829-19837955)
chr3 (174-218)||(19848439-19848483)
chr3 (122-216)||(19955517-19955608)
chr3 (86-215)||(19988977-19989103)
chr3 (139-214)||(19818004-19818076)
[»] chr5 (3 HSPs)
chr5 (4-215)||(9814483-9814694)
chr5 (4-215)||(2319495-2319706)
chr5 (76-213)||(26355460-26355594)
[»] chr4 (1 HSPs)
chr4 (4-213)||(55864487-55864696)
[»] chr7 (3 HSPs)
chr7 (5-215)||(45887509-45887719)
chr7 (4-215)||(47331558-47331772)
chr7 (4-215)||(48259475-48259686)
[»] chr1 (1 HSPs)
chr1 (129-213)||(1716671-1716752)


Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 20016657 - 20016901
Alignment:
Q  1 aacccatttgtcttgtgggtggcgccacccagtgaaatgaaacttcaaaggcgactcctttggatgaaagacacgagacattgatgatggattaaaacca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016657 aacccatttgtcttgtgggtggcgccacccagtgaaatgaaacttcaaaggcgactcctttggatgaaagacacgagacattgatgatggattaaaacca 20016756  T
Q  101 aaaggtgattcatgaatgtactttgaaatgggttttaaaaaatgggcagttctgagagttgcttcagtgtcaccaccagcaggtgagagcatgaaatctt 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016757 aaaggtgattcatgaatgtaatttgaaatgggttttaaaaaatgggcagttctgagagttgcttcagtgtcaccaccagcaggtgagagcatgaaatctt 20016856  T
Q  201 ccctcacctccatcatagcattaaatggcttctcattcatcattg 245  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||    
T  20016857 ccctcacctccatgatagcattcaatggcttctcattcatcattg 20016901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 216
Target Start/End: Complemental strand, 19811854 - 19811728
Alignment:
Q  87 atggattaaaaccaaaaggtgattcatgaatgtactttgaaatgggttttaaaaaatgggcagttctgagagttgcttcagtgtcaccaccagcaggtga 186  Q
    ||||||||||  |||||| || |||||||||| | |||||||||||||| | |||||| |||||||||| |||||  ||| |||   |||||| ||||||    
T  19811854 atggattaaactcaaaagctggttcatgaatggagtttgaaatgggtttaagaaaatgagcagttctgaaagttgaatcactgt---caccagaaggtga 19811758  T
Q  187 gagcatgaaatcttccctcacctccatcat 216  Q
     ||||||||||||||||| || ||||||||    
T  19811757 aagcatgaaatcttccctgacttccatcat 19811728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 216
Target Start/End: Complemental strand, 19837955 - 19837829
Alignment:
Q  87 atggattaaaaccaaaaggtgattcatgaatgtactttgaaatgggttttaaaaaatgggcagttctgagagttgcttcagtgtcaccaccagcaggtga 186  Q
    |||| ||||||  |||||||| ||| | |||| | |||| ||| ||||| | |||||||||||||||||| ||||||||| | ||||||   ||| ||||    
T  19837955 atggcttaaaattaaaaggtggttcttcaatggagtttgcaataggtttaagaaaatgggcagttctgagtgttgcttcactatcacca---gcaagtga 19837859  T
Q  187 gagcatgaaatcttccctcacctccatcat 216  Q
     |||||||||||||||||||||||||||||    
T  19837858 aagcatgaaatcttccctcacctccatcat 19837829  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 19848483 - 19848439
Alignment:
Q  174 caccagcaggtgagagcatgaaatcttccctcacctccatcatag 218  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||    
T  19848483 caccagctggtgaaagcatgaaatcttccctcacctccatcatag 19848439  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 216
Target Start/End: Complemental strand, 19955608 - 19955517
Alignment:
Q  122 tttgaaatgggttttaaaaaatgggcagttctgagagttgcttcagtgtcaccaccagcaggtgagagcatgaaatcttccctcacctccatcat 216  Q
    |||||||||||||| | ||||||||| |||||||| ||||  ||| |   | ||||||| ||||| |||||||| ||||||||||||||||||||    
T  19955608 tttgaaatgggtttaagaaaatgggctgttctgagtgttggatcact---atcaccagctggtgaaagcatgaactcttccctcacctccatcat 19955517  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 215
Target Start/End: Complemental strand, 19989103 - 19988977
Alignment:
Q  86 gatggattaaaaccaaaaggtgattcatgaatgtactttgaaatgggttttaaaaaatgggcagttctgagagttgcttcagtgtcaccaccagcaggtg 185  Q
    ||||||||||| ||| |||||| ||| | ||||   |||||||||||||| | |||||||||  |||||||| ||| |||| |||   ||||||| ||||    
T  19989103 gatggattaaacccagaaggtggttcttcaatggtgtttgaaatgggtttgagaaaatgggcgattctgagaattggttcactgt---caccagctggtg 19989007  T
Q  186 agagcatgaaatcttccctcacctccatca 215  Q
    | ||||||  ||||||| ||||||||||||    
T  19989006 aaagcatgtgatcttccttcacctccatca 19988977  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 19818076 - 19818004
Alignment:
Q  139 aaaatgggcagttctgagagttgcttcagtgtcaccaccagcaggtgagagcatgaaatcttccctcacctccatc 214  Q
    |||||| ||||||||||| ||||  ||| ||||||||   |||||||| |||||||||||||| || |||||||||    
T  19818076 aaaatgagcagttctgagtgttggatcactgtcacca---gcaggtgaaagcatgaaatcttctctaacctccatc 19818004  T

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Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 215
Target Start/End: Complemental strand, 9814694 - 9814483
Alignment:
Q  4 ccatttgtcttgtgggtggcgccacccagtgaaatgaaacttcaaaggcgactcctttggatgaaagacacgagacattgatgatggattaaaaccaaaa 103  Q
    |||||| ||||||||||  ||||| ||| ||||||| || ||||||||| |||| ||||||| ||| |||  ||||| ||||||||| ||||||||||||    
T  9814694 ccatttctcttgtgggtaacgccatccattgaaatggaatttcaaaggccactcatttggatcaaacacataagacaatgatgatgggttaaaaccaaaa 9814595  T
Q  104 ggtgat---tcatgaatgtactttgaaatgggttttaaaaaatgggcagttctgagagttgcttcagtgtcaccaccagcaggtgagagcatgaaatctt 200  Q
    ||||||   ||||||||| | |||||||||||||||| |||||| ||  |||| |||||||||||| ||| ||||   |  ||||||| |||||||||||    
T  9814594 ggtgatggttcatgaatggaatttgaaatgggttttagaaaatgagccattctaagagttgcttcactgtgacca---gttggtgagatcatgaaatctt 9814498  T
Q  201 ccctcacctccatca 215  Q
    |||||||||||||||    
T  9814497 ccctcacctccatca 9814483  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 2319495 - 2319706
Alignment:
Q  4 ccatttgtcttgtgggtggcgccacccagtgaaatgaaacttcaaaggcgactcctttggatgaaagacacgagacattgatgatggattaaaaccaaaa 103  Q
    |||||| ||||||||||| ||||| ||| ||||||| || ||||||||| |||| ||||||| ||| |||  ||||| ||||||||| ||||||||||||    
T  2319495 ccatttctcttgtgggtgacgccatccattgaaatggaatttcaaaggccactcatttggatcaaacacataagacaatgatgatgggttaaaaccaaaa 2319594  T
Q  104 ggtgat---tcatgaatgtactttgaaatgggttttaaaaaatgggcagttctgagagttgcttcagtgtcaccaccagcaggtgagagcatgaaatctt 200  Q
    ||| ||   |||| |||| | |||||||||||||||| |||||| ||  |||| |||||||||||| ||| ||||   |  ||||||| |||||||||||    
T  2319595 ggtcatggttcataaatggaatttgaaatgggttttagaaaatgagccattctaagagttgcttcactgtgacca---gttggtgagatcatgaaatctt 2319691  T
Q  201 ccctcacctccatca 215  Q
    |||||||||||||||    
T  2319692 ccctcacctccatca 2319706  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 76 - 213
Target Start/End: Original strand, 26355460 - 26355594
Alignment:
Q  76 agacattgatgatggattaaaaccaaaaggtgattcatgaatgtactttgaaatgggttttaaaaaatgggcagttctgagagttgcttcagtgtcacca 175  Q
    ||||||||||||||| ||||| |||||||||  |||||||||| | |||||||||||||||| |||||||||  |||||| |||||||||| |||    |    
T  26355460 agacattgatgatgggttaaagccaaaaggttgttcatgaatggaatttgaaatgggttttagaaaatgggctattctgaaagttgcttcactgt---ga 26355556  T
Q  176 ccagcaggtgagagcatgaaatcttccctcacctccat 213  Q
    ||| | |||||||||||||||||||||||| |||||||    
T  26355557 ccatctggtgagagcatgaaatcttccctctcctccat 26355594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 4 - 213
Target Start/End: Original strand, 55864487 - 55864696
Alignment:
Q  4 ccatttgtcttgtgggtggcgccacccagtgaaatgaaacttcaaaggcgactcctttggatgaaagacacgagacattgatgatggattaaaaccaaaa 103  Q
    |||||| ||||||||||| ||||| ||| ||||||| || ||||||||| |||| ||||||| ||| |||  ||||| ||||||||| ||||||||||||    
T  55864487 ccatttctcttgtgggtgacgccaaccattgaaatggaatttcaaaggccactcatttggatcaaacacataagacaatgatgatgggttaaaaccaaaa 55864586  T
Q  104 ggtgat---tcatgaatgtactttgaaatgggttttaaaaaatgggcagttctgagagttgcttcagtgtcaccaccagcaggtgagagcatgaaatctt 200  Q
    ||||||   ||||||||| | |||||||||||||||| |||||| |   |||| |||||||||||| ||| ||||   |  ||||||| |||||||||||    
T  55864587 ggtgatggttcatgaatggaatttgaaatgggttttagaaaatgagtcattctaagagttgcttcactgtgacca---gttggtgagatcatgaaatctt 55864683  T
Q  201 ccctcacctccat 213  Q
    |||||||||||||    
T  55864684 ccctcacctccat 55864696  T

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Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 215
Target Start/End: Original strand, 45887509 - 45887719
Alignment:
Q  5 catttgtcttgtgggtggcgccacccagtgaaatgaaacttcaaaggcgactcctttggatgaaagacacgagacattgatgatggattaaaaccaaaag 104  Q
    ||||| ||||||||||| ||||| ||| ||||||| || ||||||||| |||| ||||||| ||| |||  ||||| ||||||||| |||||||||||||    
T  45887509 catttctcttgtgggtgacgccatccattgaaatggaatttcaaaggccactcatttggatcaaacacataagacaatgatgatgggttaaaaccaaaag 45887608  T
Q  105 gtgat---tcatgaatgtactttgaaatgggttttaaaaaatgggcagttctgagagttgcttcagtgtcaccaccagcaggtgagagcatgaaatcttc 201  Q
    || ||   |||| |||| | |||||||||||||||| |||||| ||  |||| |||||||||||| ||| ||||   |  ||||||| ||||||||||||    
T  45887609 gtcatggttcataaatggaatttgaaatgggttttagaaaatgagccattctaagagttgcttcactgtgacca---gttggtgagatcatgaaatcttc 45887705  T
Q  202 cctcacctccatca 215  Q
    ||||||||||||||    
T  45887706 cctcacctccatca 45887719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 215
Target Start/End: Complemental strand, 47331772 - 47331558
Alignment:
Q  4 ccatttgtcttgtgggtggcgccacccagtgaaatgaaacttcaaaggcgactcctttggatgaaagacacgagacattgatgatggattaaaaccaaaa 103  Q
    |||||| ||||||||||| ||||| ||| ||||||| || ||||||| | |||| ||||||| ||| |||  ||||| ||||||||| ||||||||||||    
T  47331772 ccatttctcttgtgggtgacgccatccattgaaatggaatttcaaagaccactcatttggatcaaacacataagacaatgatgatgggttaaaaccaaaa 47331673  T
Q  104 ggtga------ttcatgaatgtactttgaaatgggttttaaaaaatgggcagttctgagagttgcttcagtgtcaccaccagcaggtgagagcatgaaat 197  Q
    |||||      |||||||||| | |||||||||||||||| |||||| ||  |||| |||||||||||| |||   ||||||  ||||||| ||||||||    
T  47331672 ggtgatgatggttcatgaatggaatttgaaatgggttttagaaaatgagccattctaagagttgcttcactgt---caccagttggtgagatcatgaaat 47331576  T
Q  198 cttccctcacctccatca 215  Q
    |||||||||||| |||||    
T  47331575 cttccctcaccttcatca 47331558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 48259475 - 48259686
Alignment:
Q  4 ccatttgtcttgtgggtggcgccacccagtgaaatgaaacttcaaaggcgactcctttggatgaaagacacgagacattgatgatggattaaaaccaaaa 103  Q
    |||||| ||||||||||| ||||| ||| ||||||| || ||||||||| |||| ||||||| ||| |||  ||||| ||||||||| ||||||||||||    
T  48259475 ccatttctcttgtgggtgacgccatccattgaaatggaatttcaaaggccactcatttggatcaaacacataagacaatgatgatgggttaaaaccaaaa 48259574  T
Q  104 ggtga---ttcatgaatgtactttgaaatgggttttaaaaaatgggcagttctgagagttgcttcagtgtcaccaccagcaggtgagagcatgaaatctt 200  Q
    |||||   |||||||||| | ||||||||| |||||| |||||| ||  |||| ||||||| |||| |||    ||| |  ||||||| |||||||||||    
T  48259575 ggtgatggttcatgaatggaatttgaaatgagttttagaaaatgagccattctaagagttgtttcactgt---gaccggttggtgagatcatgaaatctt 48259671  T
Q  201 ccctcacctccatca 215  Q
    ||||||||| |||||    
T  48259672 ccctcaccttcatca 48259686  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 1716752 - 1716671
Alignment:
Q  129 tgggttttaaaaaatgggcagttctgagagttgcttcagtgtcaccaccagcaggtgagagcatgaaatcttccctcacctccat 213  Q
    ||||||| | ||||||||| |||||||  |||| |||| | |||| |||||   |||| ||||||||||||||||||||||||||    
T  1716752 tgggtttgagaaaatgggctgttctgaatgttggttcattctcacaaccag---gtgaaagcatgaaatcttccctcacctccat 1716671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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