View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8093_low_14 (Length: 256)

Name: NF8093_low_14
Description: NF8093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8093_low_14
NF8093_low_14
[»] chr4 (8 HSPs)
chr4 (1-243)||(52734695-52734937)
chr4 (109-161)||(17822883-17822935)
chr4 (20-55)||(8422988-8423023)
chr4 (20-57)||(35684277-35684314)
chr4 (65-127)||(55437345-55437409)
chr4 (109-161)||(21157768-21157820)
chr4 (109-161)||(26747420-26747472)
chr4 (109-161)||(28615334-28615386)
[»] chr5 (6 HSPs)
chr5 (20-66)||(16945123-16945169)
chr5 (109-162)||(32172653-32172706)
chr5 (109-165)||(2568658-2568714)
chr5 (91-146)||(32197702-32197757)
chr5 (65-132)||(10771935-10772003)
chr5 (20-56)||(12521450-12521486)
[»] chr2 (9 HSPs)
chr2 (65-163)||(40837451-40837553)
chr2 (109-163)||(11513898-11513952)
chr2 (107-163)||(13737002-13737058)
chr2 (20-55)||(9477863-9477898)
chr2 (18-68)||(3101190-3101240)
chr2 (109-163)||(43985019-43985073)
chr2 (11-48)||(5133646-5133683)
chr2 (20-56)||(43203012-43203048)
chr2 (109-141)||(44590034-44590066)
[»] chr8 (6 HSPs)
chr8 (91-132)||(5383133-5383174)
chr8 (20-67)||(12496562-12496609)
chr8 (118-163)||(36643909-36643954)
chr8 (23-67)||(6950223-6950267)
chr8 (111-163)||(38874648-38874700)
chr8 (109-161)||(39561559-39561611)
[»] chr7 (6 HSPs)
chr7 (20-56)||(753354-753390)
chr7 (91-161)||(18749835-18749905)
chr7 (109-165)||(2825245-2825301)
chr7 (109-161)||(12110360-12110412)
chr7 (109-161)||(12792642-12792694)
chr7 (109-161)||(40439054-40439106)
[»] chr6 (3 HSPs)
chr6 (20-55)||(33068712-33068747)
chr6 (23-56)||(32408833-32408866)
chr6 (91-135)||(2034490-2034534)
[»] chr3 (6 HSPs)
chr3 (20-66)||(28289261-28289307)
chr3 (108-161)||(36887503-36887556)
chr3 (109-161)||(21367667-21367719)
chr3 (109-161)||(25776117-25776169)
chr3 (20-56)||(43116578-43116614)
chr3 (109-161)||(53789479-53789531)
[»] chr1 (12 HSPs)
chr1 (104-146)||(26779958-26780000)
chr1 (88-130)||(44251515-44251557)
chr1 (104-170)||(49175614-49175680)
chr1 (109-165)||(7137012-7137068)
chr1 (109-149)||(8130436-8130476)
chr1 (20-56)||(12519120-12519156)
chr1 (109-161)||(12564517-12564569)
chr1 (20-56)||(24263289-24263325)
chr1 (109-161)||(27887136-27887188)
chr1 (109-161)||(34290236-34290288)
chr1 (109-141)||(37842393-37842425)
chr1 (109-145)||(38219913-38219949)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 52734695 - 52734937
Alignment:
Q  1 tatgaatatgagacctggattggataaacagcttaattaagtgtttatagcataaaaccttatcataagctatatctataacaaaacaaaaaagtcaaat 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52734695 tatgaatatgaggcctggattggataaacagcttaattaagtgtttatagcataaaaccttatcataagctatatctataacaaaacaaaaaagtcaaat 52734794  T
Q  101 tactttcatataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaataacagatataggcatgttataatctctctcaaacagtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52734795 tactttcatataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaataacagatataggcatgttataatctctctcaaacagtc 52734894  T
Q  201 taacaagtgaaacaacaaacttatgtccatacgtttcttgtct 243  Q
    | ||||||||||||||||||||||||||||| |||||||||||    
T  52734895 tcacaagtgaaacaacaaacttatgtccatatgtttcttgtct 52734937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 17822935 - 17822883
Alignment:
Q  109 tataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaa 161  Q
    |||||||||||||||||||||||| || ||||| |||| || |||||||||||    
T  17822935 tataagttgttttcataagctatcttggagaacttatgaaaataagctaaaaa 17822883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 8423023 - 8422988
Alignment:
Q  20 ttggataaacagcttaattaagtgtttatagcataa 55  Q
    ||||||||||| ||||||||||||||||||||||||    
T  8423023 ttggataaacaacttaattaagtgtttatagcataa 8422988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 35684314 - 35684277
Alignment:
Q  20 ttggataaacagcttaattaagtgtttatagcataaaa 57  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  35684314 ttggataatcagcttaattaagtgtatatagcataaaa 35684277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 55437409 - 55437345
Alignment:
Q  65 ataagctatatctataacaaaacaaaa--aagtcaaattactttcatataagttgttttcataag 127  Q
    ||||||||| |||||||||| | ||||  ||||||||||| ||||||||||| | ||||||||||    
T  55437409 ataagctatttctataacaatataaaataaagtcaaattattttcatataagctattttcataag 55437345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 21157768 - 21157820
Alignment:
Q  109 tataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaa 161  Q
    |||||| |||||||||| |||||| |||||| | ||||||| |||||||||||    
T  21157768 tataagatgttttcatatgctatcctgaagagcttatggaaataagctaaaaa 21157820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 26747472 - 26747420
Alignment:
Q  109 tataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaa 161  Q
    |||||||||||||||| || |||| | |||||| ||||||| |||||||||||    
T  26747472 tataagttgttttcattagttatcctaaagaacttatggaaataagctaaaaa 26747420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 28615334 - 28615386
Alignment:
Q  109 tataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaa 161  Q
    ||||||||||||||||||||||| ||||||| | |||| || ||||| |||||    
T  28615334 tataagttgttttcataagctataatgaagagcttatgaaaataagccaaaaa 28615386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 16945169 - 16945123
Alignment:
Q  20 ttggataaacagcttaattaagtgtttatagcataaaaccttatcat 66  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||    
T  16945169 ttggataaacagcctaattaagtgtttatagcataaaagcttatcat 16945123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 32172653 - 32172706
Alignment:
Q  109 tataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaat 162  Q
    |||||| ||||||||||||||||||||||||||  |||||| |||||| |||||    
T  32172653 tataagctgttttcataagctatcatgaagaactaatggaaataagctgaaaat 32172706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 2568658 - 2568714
Alignment:
Q  109 tataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaataac 165  Q
    ||||||||||||||||||||||||||| ||| |  ||| || |||||||||||||||    
T  2568658 tataagttgttttcataagctatcatggagagctaatgaaaataagctaaaaataac 2568714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 32197702 - 32197757
Alignment:
Q  91 aaagtcaaattactttcatataagttgttttcataagctatcatgaagaacatatg 146  Q
    ||||||||| || ||||||||||| ||||| ||||||||||| |||||||| ||||    
T  32197702 aaagtcaaactattttcatataagctgtttccataagctatcctgaagaacttatg 32197757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 10772003 - 10771935
Alignment:
Q  65 ataagctatatctataacaaaacaaa-aaagtcaaattactttcatataagttgttttcataagctatc 132  Q
    ||||||||| |||||||||||| |   ||||| |||||  |||||||||||||| ||||||||||||||    
T  10772003 ataagctatttctataacaaaaaatgtaaagttaaattgttttcatataagttgctttcataagctatc 10771935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 12521450 - 12521486
Alignment:
Q  20 ttggataaacagcttaattaagtgtttatagcataaa 56  Q
    |||||||||||||||||||||||| || |||||||||    
T  12521450 ttggataaacagcttaattaagtgcttttagcataaa 12521486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 40837553 - 40837451
Alignment:
Q  65 ataagctatatctataacaaaacaaa----aaagtcaaattactttcatataagttgttttcataagctatcatgaagaacatatggaactaagctaaaa 160  Q
    ||||||||| |||||||||||| | |    |||||||||||  ||||||||| |||||||| ||||||||||||| ||| | ||||||| |||||| |||    
T  40837553 ataagctatttctataacaaaagataaattaaagtcaaattgttttcatatatgttgttttaataagctatcatgtagagcttatggaaataagctgaaa 40837454  T
Q  161 ata 163  Q
    |||    
T  40837453 ata 40837451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 11513898 - 11513952
Alignment:
Q  109 tataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaata 163  Q
    ||||||||||||||||||||||||||| ||||| | ||||| |||||| ||||||    
T  11513898 tataagttgttttcataagctatcatggagaacttttggaaataagctgaaaata 11513952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 13737002 - 13737058
Alignment:
Q  107 catataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaata 163  Q
    |||||||||| |||||||||||||||| | ||||| |||| || |||||||||||||    
T  13737002 catataagtttttttcataagctatcacggagaacttatgaaaataagctaaaaata 13737058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 9477863 - 9477898
Alignment:
Q  20 ttggataaacagcttaattaagtgtttatagcataa 55  Q
    ||||||||||| ||||||||||||||||||||||||    
T  9477863 ttggataaacaacttaattaagtgtttatagcataa 9477898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 3101240 - 3101190
Alignment:
Q  18 gattggataaacagcttaattaagtgtttatagcataaaaccttatcataa 68  Q
    |||||||||| ||||||||||||||  ||||||||||||  ||||||||||    
T  3101240 gattggataagcagcttaattaagtccttatagcataaatgcttatcataa 3101190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 43985073 - 43985019
Alignment:
Q  109 tataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaata 163  Q
    |||||||||||||||||||||||| |||||| | |||| || |||||| ||||||    
T  43985073 tataagttgttttcataagctatcttgaagagcttatgaaaataagctgaaaata 43985019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 5133646 - 5133683
Alignment:
Q  11 agacctggattggataaacagcttaattaagtgtttat 48  Q
    |||||| | |||||||||||||||||||||||||||||    
T  5133646 agaccttgtttggataaacagcttaattaagtgtttat 5133683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 43203012 - 43203048
Alignment:
Q  20 ttggataaacagcttaattaagtgtttatagcataaa 56  Q
    ||||||||| | |||||||||||||||||||||||||    
T  43203012 ttggataaatatcttaattaagtgtttatagcataaa 43203048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 44590034 - 44590066
Alignment:
Q  109 tataagttgttttcataagctatcatgaagaac 141  Q
    |||||||||||||||||||||||| ||||||||    
T  44590034 tataagttgttttcataagctatcttgaagaac 44590066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 5383133 - 5383174
Alignment:
Q  91 aaagtcaaattactttcatataagttgttttcataagctatc 132  Q
    |||||||||||  |||||||||||||||||||||||||||||    
T  5383133 aaagtcaaattgttttcatataagttgttttcataagctatc 5383174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 12496562 - 12496609
Alignment:
Q  20 ttggataaacagcttaattaagtgtttatagcataaaaccttatcata 67  Q
    |||||||| ||||||||||||||||||||||||| ||  |||||||||    
T  12496562 ttggataaccagcttaattaagtgtttatagcattaacgcttatcata 12496609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 36643954 - 36643909
Alignment:
Q  118 ttttcataagctatcatgaagaacatatggaactaagctaaaaata 163  Q
    |||||||||||||||||| ||||| ||||||| |||||| ||||||    
T  36643954 ttttcataagctatcatggagaacgtatggaaataagctgaaaata 36643909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 6950223 - 6950267
Alignment:
Q  23 gataaacagcttaattaagtgtttatagcataaaaccttatcata 67  Q
    |||||||| |||||||||||| ||||||||||||  |||||||||    
T  6950223 gataaacaacttaattaagtgcttatagcataaacgcttatcata 6950267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 38874648 - 38874700
Alignment:
Q  111 taagttgttttcataagctatcatgaagaacatatggaactaagctaaaaata 163  Q
    |||| ||||||||||||||||  || |||||||||| || |||||||||||||    
T  38874648 taagctgttttcataagctattttggagaacatatgaaaataagctaaaaata 38874700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 39561611 - 39561559
Alignment:
Q  109 tataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaa 161  Q
    |||||||||||||| |||||||||||||| | | ||||||| |||||| ||||    
T  39561611 tataagttgttttcgtaagctatcatgaaaagcttatggaaataagctgaaaa 39561559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 753390 - 753354
Alignment:
Q  20 ttggataaacagcttaattaagtgtttatagcataaa 56  Q
    ||||||||||| |||||||||||||||||||||||||    
T  753390 ttggataaacaacttaattaagtgtttatagcataaa 753354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 18749905 - 18749835
Alignment:
Q  91 aaagtcaaattactttcatataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaa 161  Q
    ||||||||| || ||| ||||||| |||||||||||||||||| | | ||| ||||||| |||||| ||||    
T  18749905 aaagtcaaactatttttatataagctgttttcataagctatcacggaaaacttatggaaataagctgaaaa 18749835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 2825301 - 2825245
Alignment:
Q  109 tataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaataac 165  Q
    ||||||||||||||| |||||||| |  ||||| ||||||| |||||| ||||||||    
T  2825301 tataagttgttttcacaagctatcctagagaacttatggaaataagctgaaaataac 2825245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 12110360 - 12110412
Alignment:
Q  109 tataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaa 161  Q
    |||||| ||||||||||||||||| |||||||| |||| || ||| |||||||    
T  12110360 tataagctgttttcataagctatcttgaagaacttatgaaaataatctaaaaa 12110412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 12792694 - 12792642
Alignment:
Q  109 tataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaa 161  Q
    |||||| | ||||||||||||||| |||||| ||||||||| |||||| ||||    
T  12792694 tataagctattttcataagctatcttgaagagcatatggaaataagctgaaaa 12792642  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 40439054 - 40439106
Alignment:
Q  109 tataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaa 161  Q
    |||||||||||||||| ||||||| |||||| | ||||||| |||| ||||||    
T  40439054 tataagttgttttcattagctatcctgaagagcttatggaaataagttaaaaa 40439106  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 33068747 - 33068712
Alignment:
Q  20 ttggataaacagcttaattaagtgtttatagcataa 55  Q
    |||||| |||||||||||||||||||||||||||||    
T  33068747 ttggatgaacagcttaattaagtgtttatagcataa 33068712  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 32408833 - 32408866
Alignment:
Q  23 gataaacagcttaattaagtgtttatagcataaa 56  Q
    |||||||| |||||||||||||||||||||||||    
T  32408833 gataaacaacttaattaagtgtttatagcataaa 32408866  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 2034534 - 2034490
Alignment:
Q  91 aaagtcaaattactttcatataagttgttttcataagctatcatg 135  Q
    ||||||||| |||||||||||||| | ||||||||||||| ||||    
T  2034534 aaagtcaaactactttcatataagcttttttcataagctaacatg 2034490  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 28289307 - 28289261
Alignment:
Q  20 ttggataaacagcttaattaagtgtttatagcataaaaccttatcat 66  Q
    |||||||||||| |||||||||||||| |||||||||  ||||||||    
T  28289307 ttggataaacagtttaattaagtgtttttagcataaacacttatcat 28289261  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 36887503 - 36887556
Alignment:
Q  108 atataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaa 161  Q
    ||||||||||||||||||||| ||| |||||||| |||| || |||||| ||||    
T  36887503 atataagttgttttcataagccatcttgaagaacttatgaaaataagctgaaaa 36887556  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 21367667 - 21367719
Alignment:
Q  109 tataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaa 161  Q
    |||||||||||||||||||||||| || ||||| |||| || |||||| ||||    
T  21367667 tataagttgttttcataagctatcttggagaacttatgaaaataagctgaaaa 21367719  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 25776117 - 25776169
Alignment:
Q  109 tataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaa 161  Q
    ||||||||||||||||||| | || |||||||| ||||||| |||||| ||||    
T  25776117 tataagttgttttcataagttgtcttgaagaacttatggaagtaagctgaaaa 25776169  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 43116614 - 43116578
Alignment:
Q  20 ttggataaacagcttaattaagtgtttatagcataaa 56  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  43116614 ttggataaacaacttaatttagtgtttatagcataaa 43116578  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 53789531 - 53789479
Alignment:
Q  109 tataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaa 161  Q
    ||||||||||| ||||||||||||||| ||||| |||| || |||||| ||||    
T  53789531 tataagttgttatcataagctatcatggagaacttatgaaattaagctgaaaa 53789479  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 26780000 - 26779958
Alignment:
Q  104 tttcatataagttgttttcataagctatcatgaagaacatatg 146  Q
    |||| |||||||||||||||||||||||| |||||||| ||||    
T  26780000 tttcctataagttgttttcataagctatcttgaagaacttatg 26779958  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 44251515 - 44251557
Alignment:
Q  88 aaaaaagtcaaattactttcatataagttgttttcataagcta 130  Q
    ||||||||||||| | ||| |||||||||||||||||||||||    
T  44251515 aaaaaagtcaaatgatttttatataagttgttttcataagcta 44251557  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 170
Target Start/End: Original strand, 49175614 - 49175680
Alignment:
Q  104 tttcatataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaataacagata 170  Q
    ||||||||||||| ||| || ||||||||||| ||||| ||||||| |||||| |||| ||| ||||    
T  49175614 tttcatataagttatttgcacaagctatcatgtagaacttatggaaataagctgaaaacaactgata 49175680  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 7137068 - 7137012
Alignment:
Q  109 tataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaataac 165  Q
    |||||| ||||||||||||||||| || ||||| |||| || |||||| ||||||||    
T  7137068 tataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaataac 7137012  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 8130436 - 8130476
Alignment:
Q  109 tataagttgttttcataagctatcatgaagaacatatggaa 149  Q
    ||||||||||||||||||||||||||| | ||| |||||||    
T  8130436 tataagttgttttcataagctatcatggaaaacttatggaa 8130476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 12519156 - 12519120
Alignment:
Q  20 ttggataaacagcttaattaagtgtttatagcataaa 56  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  12519156 ttggataaacaacttaactaagtgtttatagcataaa 12519120  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 12564569 - 12564517
Alignment:
Q  109 tataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaa 161  Q
    |||| ||||||||||||||||||| || ||||| ||||||| |||||| ||||    
T  12564569 tataggttgttttcataagctatcttggagaacttatggaaataagctgaaaa 12564517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 24263325 - 24263289
Alignment:
Q  20 ttggataaacagcttaattaagtgtttatagcataaa 56  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  24263325 ttggataaacagtttaattaagtgcttatagcataaa 24263289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 27887188 - 27887136
Alignment:
Q  109 tataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaa 161  Q
    |||||||||||||||||| |||||||| ||| |||||  || |||||||||||    
T  27887188 tataagttgttttcataaactatcatggagagcatataaaaataagctaaaaa 27887136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 34290236 - 34290288
Alignment:
Q  109 tataagttgttttcataagctatcatgaagaacatatggaactaagctaaaaa 161  Q
    |||||| ||||||||||||||||| |||||||| |||| || |||||| ||||    
T  34290236 tataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaa 34290288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 37842425 - 37842393
Alignment:
Q  109 tataagttgttttcataagctatcatgaagaac 141  Q
    |||||||||||||||||||||||| ||||||||    
T  37842425 tataagttgttttcataagctatcttgaagaac 37842393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 38219913 - 38219949
Alignment:
Q  109 tataagttgttttcataagctatcatgaagaacatat 145  Q
    ||||||||||||||||||||| || ||||||||||||    
T  38219913 tataagttgttttcataagctctcttgaagaacatat 38219949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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