View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8093_low_15 (Length: 253)

Name: NF8093_low_15
Description: NF8093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8093_low_15
NF8093_low_15
[»] chr3 (17 HSPs)
chr3 (9-253)||(20016412-20016656)
chr3 (18-250)||(19811944-19812176)
chr3 (16-251)||(20036826-20037061)
chr3 (15-253)||(19950785-19951023)
chr3 (16-253)||(19838045-19838282)
chr3 (15-251)||(19989185-19989421)
chr3 (16-251)||(19955738-19955973)
chr3 (14-252)||(19818219-19818457)
chr3 (16-214)||(19853212-19853410)
chr3 (16-251)||(19848650-19848885)
chr3 (16-224)||(20045813-20046021)
chr3 (9-250)||(26646674-26646915)
chr3 (16-250)||(19857734-19857969)
chr3 (36-130)||(20005225-20005319)
chr3 (48-130)||(19943503-19943585)
chr3 (48-130)||(24840226-24840308)
chr3 (48-250)||(26651697-26651899)
[»] chr5 (3 HSPs)
chr5 (15-251)||(9814700-9814936)
chr5 (17-253)||(26355148-26355384)
chr5 (48-130)||(38435383-38435465)
[»] chr1 (1 HSPs)
chr1 (17-250)||(1716875-1717111)
[»] chr8 (1 HSPs)
chr8 (9-156)||(22652301-22652448)


Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 20016412 - 20016656
Alignment:
Q  9 agtgagatgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtat 108  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016412 agtgagatgaaaacaggatcgccaatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtat 20016511  T
Q  109 ttgtcttagaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016512 ttgtcttagaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctg 20016611  T
Q  209 cttccacacagattcatgctttggtttaagctgatcaacccaaca 253  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||    
T  20016612 cttccacacagattcatactttgttttaagctgatcaacccaaca 20016656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 19812176 - 19811944
Alignment:
Q  18 aaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttag 117  Q
    |||| |||||| || |||| ||||||||| ||||||||||||||||||||||||||||| || |||||| |||||||||| ||||| || || |||| |     
T  19812176 aaaataggatcaccaatgatagggtaaccccccaaaaccataatatcctccaaagtgatagttgcttcaccaaatggaaaaacaaaggtgttagtctcac 19812077  T
Q  118 aacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttccacac 217  Q
    |||||||||||||  ||||| || | ||||| ||| ||||| | |||||| |||||||||| |||||||||||||||||||||| | | | ||||||||     
T  19812076 aacaccatttctcaacaaccccaaagagcaattttagatttttgagtatgtgacacttggtactcataatagcatcaaagattctagctttcttccacaa 19811977  T
Q  218 agattcatgctttggtttaagctgatcaaccca 250  Q
    |||||||| |||||||||||||| |||||||||    
T  19811976 agattcatactttggtttaagctcatcaaccca 19811944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 20036826 - 20037061
Alignment:
Q  16 tgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtctt 115  Q
    ||||||||||||| || |  ||||| ||||| || | |||||| |||||||||||| ||| ||| |||||| |||| | |||||||||||||||||||||    
T  20036826 tgaaaacaggatcaccaagaacaggataacctcctagaaccatgatatcctccaaaatgactgttgcttcaccaaaggaaaacacaaatgtatttgtctt 20036925  T
Q  116 agaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttccac 215  Q
     ||||||||||||||| ||||| |||||||||||||||||| | |  |||||  |||||| |||  |||||||||||||||||||||||| | |||||||    
T  20036926 ggaacaccatttctccacaaccccatatagcaagttttgatctttatgtatgtaacacttagtggccataatagcatcaaagattccaactttcttccac 20037025  T
Q  216 acagattcatgctttggtttaagctgatcaacccaa 251  Q
    ||||||||||  ||| ||||||| | || |||||||    
T  20037026 acagattcatagttttgtttaagtttatgaacccaa 20037061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 19951023 - 19950785
Alignment:
Q  15 atgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtct 114  Q
    |||||||||||||| || |  ||||||||||| ||||||||||||| ||||||||||||||| || || ||| |||||||||||||||||||||| ||||    
T  19951023 atgaaaacaggatcaccaagaacagggtaaccccccaaaaccataacatcctccaaagtgatagttgcctcaccaaatggaaacacaaatgtattggtct 19950924  T
Q  115 tagaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttcca 214  Q
     || ||||||||||||  ||||| || | |||||||| |||||| |  ||||    |  || || |||||||||||||||||||||||| | | ||||||    
T  19950923 cagtacaccatttctcaacaaccccaaaaagcaagttatgatttttatgtattatgcttttagtactcataatagcatcaaagattccagctttcttcca 19950824  T
Q  215 cacagattcatgctttggtttaagctgatcaacccaaca 253  Q
    ||||||||||| ||||||||||||||| |||| ||||||    
T  19950823 cacagattcatactttggtttaagctgctcaaaccaaca 19950785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 19838282 - 19838045
Alignment:
Q  16 tgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtctt 115  Q
    ||||||||| ||| || |||||||||||||| ||||||||||| | ||| |||||||||||||| || ||| |||||||||||||||||||||| ||||     
T  19838282 tgaaaacagaatcaccaatgacagggtaaccccccaaaaccatgacatcttccaaagtgattgttgcctcaccaaatggaaacacaaatgtattggtctc 19838183  T
Q  116 agaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttccac 215  Q
    | | |||||||||||  |||| ||| ||| |||||||| |||| |  | |||   || || || ||||| |||||||||||||||||||| | | ||||     
T  19838182 acagcaccatttctcaacaacttcaaataacaagtttttatttttatgaatgtagcatttagtactcattatagcatcaaagattccaactttcctccaa 19838083  T
Q  216 acagattcatgctttggtttaagctgatcaacccaaca 253  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  19838082 acagattcatactttggtttaagcttatcaacccaaca 19838045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 19989421 - 19989185
Alignment:
Q  15 atgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtct 114  Q
    |||||||||||||| || |  | ||||||||| || |||||||||| ||| ||||||||||| || || ||| |||||||||| |||||||| |||||||    
T  19989421 atgaaaacaggatcaccaagaatagggtaaccccctaaaaccataacatcttccaaagtgatagttgcctcaccaaatggaaaaacaaatgtgtttgtct 19989322  T
Q  115 tagaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttcca 214  Q
     | |||||||||||||  ||||| || |||||||||| |||| | ||  ||||| ||||||||| ||||||||||| |||||||| ||||| | ||||||    
T  19989321 cacaacaccatttctcaacaaccccaaatagcaagttatgatctttctttatgcaacacttggtactcataatagcttcaaagatgccaactttcttcca 19989222  T
Q  215 cacagattcatgctttggtttaagctgatcaacccaa 251  Q
    |||| |||||   || |||||||| ||||||||||||    
T  19989221 cacatattcaaatttgggtttaagttgatcaacccaa 19989185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 19955973 - 19955738
Alignment:
Q  16 tgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtctt 115  Q
    ||||||||| ||| || |||||||||||||| ||||||||||| | ||| |||||||||||||| || ||| |||||||||||||||||||||||||||     
T  19955973 tgaaaacagaatcaccaatgacagggtaaccccccaaaaccatgacatcttccaaagtgattgttgcctcaccaaatggaaacacaaatgtatttgtctc 19955874  T
Q  116 agaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttccac 215  Q
    | |||||||||||||  ||||  || |||||||||||| |||| |  | |||   || || || ||||| |||||||||||||||||||| | | ||||     
T  19955873 acaacaccatttctcaacaactccaaatagcaagtttttatttttatgaatgtagcatttagtactcattatagcatcaaagattccaactttcctccaa 19955774  T
Q  216 acagattcatgctttggtttaagctgatcaacccaa 251  Q
    |||||||||| |||| ||||||| | || |||||||    
T  19955773 acagattcatacttttgtttaagtttatgaacccaa 19955738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 19818457 - 19818219
Alignment:
Q  14 gatgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtc 113  Q
    ||||||||||||||| || |||| ||| ||||| |||||||| || | ||||||||||||||| || || ||| |||||||||| ||||| || || |||    
T  19818457 gatgaaaacaggatcaccaatgataggataaccccccaaaactatgacatcctccaaagtgatagttgcctcaccaaatggaaaaacaaaggtgttagtc 19818358  T
Q  114 ttagaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttcc 213  Q
    | | |||||||||||||  ||||| || ||||||||||||||||| |  | |||   || || || |||||||||||||||||||||| | | | |||||    
T  19818357 tcacaacaccatttctcaacaaccccaaatagcaagttttgatttttatgaatgtagcatttagtactcataatagcatcaaagattctagctttcttcc 19818258  T
Q  214 acacagattcatgctttggtttaagctgatcaacccaac 252  Q
    |||||||||||| |||||||||||| | |||||||||||    
T  19818257 acacagattcatactttggtttaagttcatcaacccaac 19818219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 19853410 - 19853212
Alignment:
Q  16 tgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtctt 115  Q
    |||||| |||||| || |||| ||||||||| ||||||||||||| |||||||||||| ||||| |||||| ||||||| |||||||||||||| ||||     
T  19853410 tgaaaataggatcaccaatgatagggtaaccccccaaaaccataacatcctccaaagttattgttgcttcaccaaatgggaacacaaatgtattggtctc 19853311  T
Q  116 agaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttcca 214  Q
    |||||||||||| ||  ||||| || ||| ||||||||||| | ||  |||||  | ||| || |||||||||||||||||||||||||| | ||||||    
T  19853310 agaacaccatttgtcaacaaccccacataacaagttttgatctttctttatgcagctcttagtactcataatagcatcaaagattccaactttcttcca 19853212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 19848885 - 19848650
Alignment:
Q  16 tgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtctt 115  Q
    ||||||||||||| || |  ||||| ||||| || | |||||| |||||||||||||||||||| |||||| |||| | ||||||||| |||||||| ||    
T  19848885 tgaaaacaggatcaccaagaacaggataaccccctagaaccatgatatcctccaaagtgattgttgcttcaccaaaggaaaacacaaaggtatttgtatt 19848786  T
Q  116 agaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttccac 215  Q
    || ||||||||||||  | ||| ||  |||||||||||||||| |   || |   ||||| |||  |||||||||||||||||||||||| | |||||||    
T  19848785 aggacaccatttctcaactaccccaactagcaagttttgatttttatttaagtagcacttagtggccataatagcatcaaagattccaactttcttccac 19848686  T
Q  216 acagattcatgctttggtttaagctgatcaacccaa 251  Q
    ||||||||||  ||| ||||||| | || |||||||    
T  19848685 acagattcatagttttgtttaagtttatgaacccaa 19848650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 20046021 - 20045813
Alignment:
Q  16 tgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtctt 115  Q
    |||||||| ||||||| |||| ||||||||| |||||||| || ||||||||||| || ||||| |  ||| |||| ||||| | |||||||||||| |     
T  20046021 tgaaaacatgatcgccaatgatagggtaacctcccaaaacaatgatatcctccaaggttattgttgtctcaccaaagggaaaaataaatgtatttgtatc 20045922  T
Q  116 agaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttccac 215  Q
    | |||||||||||||| ||||| | | ||| ||||| |||||| | || |||| |||||| | | |||||||||| |||||||||||||| | |||||||    
T  20045921 acaacaccatttctccacaaccccttgtagtaagttctgatttttaagaatgcaacactttgagttcataatagcttcaaagattccaacttccttccac 20045822  T
Q  216 acagattca 224  Q
    || ||||||    
T  20045821 accgattca 20045813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 26646915 - 26646674
Alignment:
Q  9 agtgagatgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtat 108  Q
    ||||| |||||||||||||| || || | ||| ||||| ||||||||||| |||||||||||||| || || |||||| |||| | || |||||| ||||    
T  26646915 agtgaaatgaaaacaggatccccaataataggataaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtat 26646816  T
Q  109 ttgtcttagaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctg 208  Q
    |||||| | |||||||||||||  | ||| ||||||||||||  |||||| |  ||||||| ||| | |||| ||| || || |||||||| ||||| |     
T  26646815 ttgtctcacaacaccatttctcaactaccccatatagcaagtcatgatttttatgtatgcggcaccttgtgcccattattgcttcaaagatgccaacttt 26646716  T
Q  209 cttccacacagattcatgctttggtttaagctgatcaaccca 250  Q
    ||||||||| | |||||  ||  ||||||| |||||||||||    
T  26646715 cttccacactgtttcatatttgagtttaagttgatcaaccca 26646674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 19857969 - 19857734
Alignment:
Q  16 tgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttg-tct 114  Q
    ||||||||||||| || | || || |||||| |||||||||| || |||||| | ||| ||||| |||||| |||| |||||||| |||||||| | |||    
T  19857969 tgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtct 19857870  T
Q  115 tagaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttcca 214  Q
     |||||||||||| ||  ||||| |||| | ||||||| ||| | ||| |||||| || || || ||| ||||||||||||| ||| || | | ||||||    
T  19857869 cagaacaccatttgtcaacaaccccataaaccaagtttggatctttcattatgcggcatttagtactcctaatagcatcaaaaatttcagctttcttcca 19857770  T
Q  215 cacagattcatgctttggtttaagctgatcaaccca 250  Q
    |||||||||||  ||||||| ||| || ||||||||    
T  19857769 cacagattcatattttggttgaagttggtcaaccca 19857734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 130
Target Start/End: Original strand, 20005225 - 20005319
Alignment:
Q  36 acagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctc 130  Q
    ||||| ||||| |||||||| || | ||| |||||||||||||| |||||| ||||| |||||||||| || ||||| | | |||||||||||||    
T  20005225 acaggataaccccccaaaacaatgacatcttccaaagtgattgttgcttcaccaaatagaaacacaaaggtgtttgtttcacaacaccatttctc 20005319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 19943585 - 19943503
Alignment:
Q  48 cccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctc 130  Q
    |||||||| || | ||| |||||||||||||| |||||| ||||| |||||||||| || ||||| | | |||||||||||||    
T  19943585 cccaaaacaatgacatcttccaaagtgattgttgcttcaccaaatagaaacacaaaggtgtttgtttcacaacaccatttctc 19943503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 24840226 - 24840308
Alignment:
Q  48 cccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctc 130  Q
    |||||||| || | |||||||||||||||||| |||||| ||||| ||||||| || || ||||| | | |||||||||||||    
T  24840226 cccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctc 24840308  T

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Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 250
Target Start/End: Complemental strand, 26651899 - 26651697
Alignment:
Q  48 cccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctccgcaacctcatatagca 147  Q
    |||||||| || | |||||||||||||||||| || ||| |||| ||||| |||||   |||||||| |  |||||||||||| | || | |||| | ||    
T  26651899 cccaaaacaatgacatcctccaaagtgattgttgcctcaccaaaaggaaaaacaaagcaatttgtctcactacaccatttctcagaaatcccataaacca 26651800  T
Q  148 agttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttccacacagattcatgctttggtttaagctgatcaac 247  Q
    ||| ||||||| ||| || ||| | ||| || ||||| ||||  |||||||| ||  | |  |||||||| ||||||| ||| || ||||| ||||||||    
T  26651799 agtcttgatttttcattacgcggctcttagtactcattataggttcaaagatgccggcttttttccacactgattcatacttgggcttaagttgatcaac 26651700  T
Q  248 cca 250  Q
    |||    
T  26651699 cca 26651697  T

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Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 9814936 - 9814700
Alignment:
Q  15 atgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtct 114  Q
    ||||||| |||||| ||||||||||| ||||| ||||||||||||| |||||||||| | || || || ||| |||| ||||||||||||||||| ||||    
T  9814936 atgaaaataggatcaccgatgacaggataaccccccaaaaccataacatcctccaaactaatcgtcgcctcaccaaacggaaacacaaatgtattcgtct 9814837  T
Q  115 tagaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttcca 214  Q
    || |||||||||||||  ||||| |||||||||||||||||| | ||| |||||| |||||||| ||||| |||||||||||||| || || | ||||||    
T  9814836 tacaacaccatttctcaacaaccccatatagcaagttttgatctttcattatgcggcacttggtactcattatagcatcaaagatacctactttcttcca 9814737  T
Q  215 cacagattcatgctttggtttaagctgatcaacccaa 251  Q
    || |||||||| |||||||||||| ||||||||||||    
T  9814736 caaagattcatactttggtttaagttgatcaacccaa 9814700  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 26355148 - 26355384
Alignment:
Q  17 gaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtctta 116  Q
    ||||| |||||| || |||||||||||||| || | |||||||| ||||||||||   |  || || ||| |||| ||||||||||||||||| |||| |    
T  26355148 gaaaataggatcaccaatgacagggtaacccccaagaaccataacatcctccaaacctaccgtcgcctcaccaaacggaaacacaaatgtattagtctca 26355247  T
Q  117 gaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttccaca 216  Q
     |||||||||||||| ||||| | || ||||||||||||||| |||||||||| || ||||| ||||| ||||||||||| || ||| | | |||||| |    
T  26355248 caacaccatttctccacaaccccgtaaagcaagttttgatttttcagtatgcggcatttggtactcattatagcatcaaaaatcccagctttcttccaaa 26355347  T
Q  217 cagattcatgctttggtttaagctgatcaacccaaca 253  Q
    | | |||||  ||  | ||||| ||||||||||||||    
T  26355348 ccggttcatatttgagcttaagttgatcaacccaaca 26355384  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 38435383 - 38435465
Alignment:
Q  48 cccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctc 130  Q
    ||||||||||| ||||| || ||||||||||| ||| || ||| |||||||||||||||||| |||||| |||||||||||||    
T  38435383 cccaaaaccatgatatcttcaaaagtgattgttgctacaccaagtggaaacacaaatgtattggtcttacaacaccatttctc 38435465  T

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Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 1717111 - 1716875
Alignment:
Q  17 gaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtctta 116  Q
    |||||||||||| || |||||||||||| | || ||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||| |    
T  1717111 gaaaacaggatcaccaatgacagggtaatcccctaaaaccataatatcctccaaagtgattgtggcttcaccaaaaggaaacacaaatgtatttgtctca 1717012  T
Q  117 gaacaccatttctccgcaacctcatatagcaagttttgatttctcagtat---gcgacacttggtgctcataatagcatcaaagattccaacctgcttcc 213  Q
     |||||||||| ||  ||| | |||||| ||||||||||||| ||  |||    ||||||||||||||||| ||||| |||||||| ||||| | |||||    
T  1717011 caacaccatttttcaacaatcccatataacaagttttgatttttctttatacgacgacacttggtgctcattatagcttcaaagatgccaactttcttcc 1716912  T
Q  214 acacagattcatgctttggtttaagctgatcaaccca 250  Q
    |||| | |||||| ||  ||||||| | |||||||||    
T  1716911 acactgtttcatgtttgagtttaagttcatcaaccca 1716875  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 22652301 - 22652448
Alignment:
Q  9 agtgagatgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtat 108  Q
    |||||||||||||||||||| || |  |||||||||||  | |||| ||||| ||| || || ||||| || || ||| ||||||||||||||||||  |    
T  22652301 agtgagatgaaaacaggatcaccaagaacagggtaaccctctaaaatcataacatcttctaaggtgatagttgcctcaccaaatggaaacacaaatgagt 22652400  T
Q  109 ttgtcttagaacaccatttctccgcaacctcatatagcaagttttgat 156  Q
    |||||| | | |||||||||||  ||||| || |||||||||| ||||    
T  22652401 ttgtctcacagcaccatttctcaacaaccccaaatagcaagttatgat 22652448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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