View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8093_low_2 (Length: 1039)
Name: NF8093_low_2
Description: NF8093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8093_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 847; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 847; E-Value: 0
Query Start/End: Original strand, 15 - 1021
Target Start/End: Original strand, 35071666 - 35072714
Alignment:
| Q |
15 |
tggacatcaacacgtaggtgctttatctaacccgtattaatgcttatgatacacacacgtttcttatttgtaacagcatttcctaatcactaacatacaa |
114 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35071666 |
tggacatcaacacgtaggtgctttatctaactcgtattaatgcttatgatacacacacgtttcttatttgtaacagcatttcctaatcactaacatacaa |
35071765 |
T |
|
| Q |
115 |
aaacaaatagccaaaatggaacatttttggattcaaatttcaa---------------cttttcataattactctcactgtgaactctgattggtcaaac |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
35071766 |
aaacaaatagccaaaatggaacatttttggattcaaatttcaatccacacgaacagaactgttcattattactctcactgtgaactctgattggtcaaac |
35071865 |
T |
|
| Q |
200 |
gatcagggttggtaacctcttccttagggacagtaacagtaagaacaccatcttcaatagaagccttaacctgatccaatttacagttagctggaagagt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35071866 |
gatcagggttggtaacctcttccttagggacagtaacagtaagaacaccatcttcaatagaagccttaacctgatccaatttacagttagctggaagagt |
35071965 |
T |
|
| Q |
300 |
aaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcact |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35071966 |
aaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcact |
35072065 |
T |
|
| Q |
400 |
cttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttccttccaatcaatctggt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35072066 |
cttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttccttccaatcaatctggt |
35072165 |
T |
|
| Q |
500 |
tgttgaggaaaattggattttctcgtgaaaattcttggattgaagtagagaatggggaattctcaaaagggatgttgttgcctggtatcatagacatttt |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
35072166 |
tgttgaggaaaattggattttctcgtgaaaattcttggattgaagtagagaatggggaattctcaaaagggctgttgttgcctggtatcatagacatttt |
35072265 |
T |
|
| Q |
600 |
gttgtgagattaaaatattgcagagattgtgttatgttgtagagacatgttctgtcttatttgaagttgttttggaaggtgaagagaattctccgtaaac |
699 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
35072266 |
gttgtgagattaaaatattgcagagattgtgttatgttgtagagacatgttctgtcttatttgaagttgttttggaaggtgaggagaattctccgtaaac |
35072365 |
T |
|
| Q |
700 |
ggacataattagatgtctccattcttaggatgttttacttgatctttgtggaatttatgttatgctattattaactcttgtgtataaatagaatacaat- |
798 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35072366 |
ggacataattagatgtctccattcttaggatattctacttgatctttgtggaatttatgttatgctattattaactcttgtgtataaatagaatacaata |
35072465 |
T |
|
| Q |
799 |
--accaatacttaaaatagacataaaaaacgatgtgagacaatagatgataattaaaccatt----------------cttacaatagataattcacatt |
880 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | |||||||||||| |
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|
| T |
35072466 |
ccaccaatacttaaaatagacataaaaaacgatgtgagacaatatatgataattaaaccattcttacataatttattccttacaaaatataattcacatt |
35072565 |
T |
|
| Q |
881 |
actgaatttacttttacataaaacagatacgcattacaatgaaacaga--------acgtacactgcacactattctcaacccaaaaacagagtaataga |
972 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
35072566 |
actgaatttacttttacataaaacagatacgcattacaatgaaacagaacacacacacacacacttcacactattctcaacccaaaaacagagtaataga |
35072665 |
T |
|
| Q |
973 |
gcttggatatgtgttcaaccagagatttcgatggacttaacatcaggtt |
1021 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35072666 |
gcttgaatatgtgttcaaccagagatttcgatggacttaacatcaggtt |
35072714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 299 - 495
Target Start/End: Original strand, 35072805 - 35073001
Alignment:
| Q |
299 |
taaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcac |
398 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||| ||||| || ||| |||||| |||||| | | || ||| ||||||| || |||||||||| || |
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|
| T |
35072805 |
taaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaatgttcctctcaccgcttatctgaagaac |
35072904 |
T |
|
| Q |
399 |
tcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttccttccaatcaatc |
495 |
Q |
| |
|
|| ||||||||| ||||| ||||||||||| || ||||| || || | |||||| ||||| ||||| |||||||| || ||||||||||||||| |
|
|
| T |
35072905 |
cctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctccttccaatcaatc |
35073001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 299 - 495
Target Start/End: Complemental strand, 35107055 - 35106859
Alignment:
| Q |
299 |
taaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcac |
398 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||| ||||| || ||| |||||| |||||| | | || | | ||||||| || |||||||||| || |
|
|
| T |
35107055 |
taaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaaagttcctctcaccgcttatctgaagaac |
35106956 |
T |
|
| Q |
399 |
tcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttccttccaatcaatc |
495 |
Q |
| |
|
|| ||||||||| ||||| ||||||||||| || ||||| || || | |||||| ||||| ||||| |||||||| || ||||||||||||||| |
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|
| T |
35106955 |
cctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctccttccaatcaatc |
35106859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 495
Target Start/End: Original strand, 36296653 - 36296774
Alignment:
| Q |
374 |
tcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttc |
473 |
Q |
| |
|
|||||||||| | |||||||| ||||| ||||||||| ||||| |||||||| || || ||||| || || | ||||||||| || || || ||||| |
|
|
| T |
36296653 |
tcctctctccactaatctgaagaactctgtcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagctttaaacacgtgtgcttc |
36296752 |
T |
|
| Q |
474 |
tggagtttccttccaatcaatc |
495 |
Q |
| |
|
||| || ||||||||||||||| |
|
|
| T |
36296753 |
tggggtctccttccaatcaatc |
36296774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 985 - 1019
Target Start/End: Complemental strand, 35098004 - 35097970
Alignment:
| Q |
985 |
gttcaaccagagatttcgatggacttaacatcagg |
1019 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35098004 |
gttcaaccagagatttcaatggacttaacatcagg |
35097970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 985 - 1019
Target Start/End: Complemental strand, 35098293 - 35098259
Alignment:
| Q |
985 |
gttcaaccagagatttcgatggacttaacatcagg |
1019 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35098293 |
gttcaaccagagatttcaatggacttaacatcagg |
35098259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 5e-68; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 732 - 1021
Target Start/End: Original strand, 24013928 - 24014213
Alignment:
| Q |
732 |
ttttacttgatctttgtggaatttatgttatgctattattaactcttgtgtataaatagaatacaataccaatacttaaaatagacataaaaaacgatgt |
831 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24013928 |
ttttacttgatccttgtggaatttatgttatgctattattaactcttgtgtataaatagaatacaataccaatacttaaaatagacataaaaaacgatgt |
24014027 |
T |
|
| Q |
832 |
gagacaatagatgataattaaaccatt----------------cttacaatagataattcacattactgaatttacttttacataaaacagatacgcatt |
915 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| | |||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
24014028 |
gagacaatagat---aattaaaccattcttacataatttattccttacaaaatataattcaca-----gaatttacttttacataaaacaga-acgcac- |
24014117 |
T |
|
| Q |
916 |
acaatgaaacagaacgtacactgcacactattctcaacccaaaaacagagtaatagagcttggatatgtgttcaaccagagatttcgatggacttaacat |
1015 |
Q |
| |
|
||| ||| ||||| |||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24014118 |
--------acacaac--acacttcacaatattctcaacctaaaaacagagtaatagagcttgaatatgtgttcaaccagagatttcgatggacttaacat |
24014207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 491
Target Start/End: Original strand, 24040861 - 24041053
Alignment:
| Q |
299 |
taaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcac |
398 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||| ||||| || ||| |||||| |||||| | | || | | ||||||| || |||||||||| || |
|
|
| T |
24040861 |
taaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttcctctcaccgcttatctgaagaac |
24040960 |
T |
|
| Q |
399 |
tcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttccttccaatc |
491 |
Q |
| |
|
|| ||||||||| ||||| |||||||| || || ||||| || || | |||||| ||||| ||||| |||||||| || ||||||||||| |
|
|
| T |
24040961 |
cctatcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagccttgaacacatgtgcttctggggtctccttccaatc |
24041053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 374 - 495
Target Start/End: Original strand, 24014379 - 24014500
Alignment:
| Q |
374 |
tcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttc |
473 |
Q |
| |
|
|||||||||| |||||||||| || || || |||||| ||||| ||||||||||| || ||||| || || | |||||| ||||| ||||| ||||| |
|
|
| T |
24014379 |
tcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgtgcttc |
24014478 |
T |
|
| Q |
474 |
tggagtttccttccaatcaatc |
495 |
Q |
| |
|
||| || ||||||||||||||| |
|
|
| T |
24014479 |
tggggtctccttccaatcaatc |
24014500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 34919235 - 34919170
Alignment:
| Q |
217 |
tcttccttagggacagtaacagtaagaacaccatcttcaatagaagccttaacctgatccaattta |
282 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||| || ||| ||| ||||||||||||| |||| |
|
|
| T |
34919235 |
tcttccttaggaacagtaacagtaagaaccccattctccataccagctttaacctgatccatttta |
34919170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 404 - 485
Target Start/End: Complemental strand, 3123163 - 3123082
Alignment:
| Q |
404 |
catcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttcctt |
485 |
Q |
| |
|
||||||||| ||||| ||||| || || || |||| |||||| | |||||||||||| ||||| |||||| |||||||||| |
|
|
| T |
3123163 |
catcttcaatttcaaccttcacctcttccttcttcaaccctggaagatcagctttgaacacatgtgcttctagagtttcctt |
3123082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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