View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8093_low_7 (Length: 416)
Name: NF8093_low_7
Description: NF8093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8093_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 95 - 374
Target Start/End: Complemental strand, 18245842 - 18245568
Alignment:
| Q |
95 |
aatagaaagttagaaattcatgtgaaaaaacactcatgctaataaaagttacttaacaaaaaattt-gaaacaaacattagaattaatgttgaatttcaa |
193 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
18245842 |
aatagaaagttagaaattcatgtgaaaaaacattcatgcgaataaaagttacttaaattttttttttgaaacaaacattagaattaatgttgaatttcaa |
18245743 |
T |
|
| Q |
194 |
gtctcacattctcatgagtaatattagattccttgaaacaaacacacttagcttgcaaagtgtgagggtgcacactctcactaagatatagagatagatc |
293 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18245742 |
gtctcacattctcatgagtaatattagattc-ttgaaacaaacacactt-----gcaaagtgtgagggtgcacactctcactaagatatagagatagatc |
18245649 |
T |
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| Q |
294 |
cgtccctgacaacacataccgaaagggagaagagtgtgaatgcaaagtaatttcatttaaaagctagtggtatttaaatat |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18245648 |
cgtccctgacaacacataccgaaagggagaagagtgtgaatgcaaagtaatttcatttaaaagctagtggtatttaaatat |
18245568 |
T |
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