View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8093_low_8 (Length: 383)
Name: NF8093_low_8
Description: NF8093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8093_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 41444420 - 41444770
Alignment:
| Q |
1 |
gtatactacactgactctccatggaccatgatcacaacaacaacannnnnnnaagcttcttttggtttatcagtaacaagtattttctcctagcgtcttt |
100 |
Q |
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| T |
41444420 |
gtatactacactgactctccatggaccatgatcacaacaacaacatttttttaagcttcttttggtttatcagtaacaagtattttctcctagcgtcttt |
41444519 |
T |
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| Q |
101 |
aggcttcaacaattttggaaaaacatcaactct--cactaattaacttgaggcaaataaaaatttatctgaaaaaagagttacatgcagcttttctttca |
198 |
Q |
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| T |
41444520 |
aggcttcaacaattttggaaaaacatcaactctctcactaattaacttgaggcaaataaaaatttatctgaaaaaagagttacatgcagcttttctttca |
41444619 |
T |
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| Q |
199 |
atcactctttgaccattacaaataattgatataatagttattgttattttgatgtgtaacgaattgtcataattgtccttcaatgtactgaaaattcaaa |
298 |
Q |
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| T |
41444620 |
atcactctttgaccattacaaataattgagataata------gttattttgatgtgtaacggattgtcataatagtccttcaatgtattgaaaattcaaa |
41444713 |
T |
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| Q |
299 |
aatagttattgattgtgaactccggtagttaaaatagtcattcaatactgacattaa |
355 |
Q |
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| T |
41444714 |
aatagttattgattgtgaacttcgttagtcaaaatagtcattcaatactgacattaa |
41444770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 340
Target Start/End: Original strand, 36218514 - 36218603
Alignment:
| Q |
250 |
atgtgtaacgaattgtcataattgtccttcaatgtactgaaaattcaaaaatagttattgattgtgaactccggtagttaaaatagtcatt |
340 |
Q |
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| T |
36218514 |
atgtgtaacaaatagtaataatagtccatcaatgtatcaaaaatttaaaa-tagttattgattgtgcacttcattagttaaaatagtcatt |
36218603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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