View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8093_low_9 (Length: 351)
Name: NF8093_low_9
Description: NF8093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8093_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 3215335 - 3215011
Alignment:
| Q |
18 |
ttctggtggtgcgtgtcgttggttcttcgcatgcgtataaactctagaacaaacttgtgacctattttcaaaagcagatgcttgcaaaggcaagacaaca |
117 |
Q |
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| T |
3215335 |
ttctggtggtgcgtgtcgttggttcttcgcatgcgtataaactctagaacaaacttgtgacctattttcaaaagcaaatgcttgcaaaggcaagacaac- |
3215237 |
T |
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| Q |
118 |
ttcgtgttgaattgcgcgctacctcgtttgataatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacaatcttgcttcaattgatga |
217 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3215236 |
ttcgtgttgaattgcgtgctacctcgtttgataatcgtacggtgcaagagtatctcattcatactcgcaatcttatagacaatcttgcttcaattgatga |
3215137 |
T |
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| Q |
218 |
tccaattcctgtcaatcagcacttagatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215136 |
tccaattcctgtcaatcagcacttagatgttattttggaaggtttaccacatggttatagtccagttatctctgttgttgagagtaagtttgatgttatt |
3215037 |
T |
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| Q |
318 |
gacatagatgaggttgaatctctgct |
343 |
Q |
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| T |
3215036 |
gacatagatgaggttgaatctctgct |
3215011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 29 - 341
Target Start/End: Complemental strand, 32460839 - 32460527
Alignment:
| Q |
29 |
cgtgtcgttggttcttcgcatgcgtataaactctagaacaaacttgtgacctattttcaaaagcagatgcttgcaaaggcaagacaacattcgtgttgaa |
128 |
Q |
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| T |
32460839 |
cgtgttgttggttcttcgcatgcgtatgaacttcggaacaaacttgtgacctattttcacaagcagatgcgtgcaaaggcaaggc-agttacgtgttgaa |
32460741 |
T |
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| Q |
129 |
ttgcgcgctacctcgtttgataatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacaatcttgc-ttcaattgatgatccaattcct |
227 |
Q |
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|||| |||| || ||||||||||||||||||| ||| |||| |||| | ||||||| | || || |||||||| ||| |||| ||||||| |||| |
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| T |
32460740 |
ctgcgttctacttctcttgataatcgtacggtacaggagcatcttcttcgcattcgcaatttaattgataatcttgctttccattggtgatccagttccc |
32460641 |
T |
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| Q |
228 |
gtcaatcagcacttagatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatg |
327 |
Q |
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| | |||||| |||||||| ||||| |||||||||||||| | ||||||||||| || || |||||||| || || ||||| |||||| || |||| |
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| T |
32460640 |
attactcagcatttagatgtaattttagaaggtttaccacaagagtatagtccagtgatttcagttgttgaaagcaaatttgacactattgatattgatg |
32460541 |
T |
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| Q |
328 |
aggttgaatctctg |
341 |
Q |
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|||| || |||||| |
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| T |
32460540 |
aggtagagtctctg |
32460527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 346
Target Start/End: Complemental strand, 36399779 - 36399481
Alignment:
| Q |
47 |
catgcgtataaactctagaacaaacttgtgacctattttcaaaagcagatgcttgcaaaggcaagacaacattcgtgttgaattgcgcgctacctcgttt |
146 |
Q |
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||||||||| |||| | | | ||||||||| | |||||||| || ||||||| ||| ||||| | |||| || |||||||| |||| |||| || || |
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| T |
36399779 |
catgcgtatgaactttgggataaacttgtggcatattttcacaaacagatgcgtgcgaaggcgcgtcaac-ttagtgttgaactgcgttctacttctctt |
36399681 |
T |
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| Q |
147 |
gataatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacaatcttgcttcaattgatgatccaattcctgtcaatcagcacttagatg |
246 |
Q |
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| |||| ||||||||| || ||||| |||||| ||| ||||| | || ||||| || || || | |||||| ||||||| ||||| || || |||| |
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| T |
36399680 |
gcaaatcttacggtacaggattatcttcttcgtattcgtgatcttgttgataatctagcctctataggagatccagttcctgttaatcaacatttggatg |
36399581 |
T |
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| Q |
247 |
ttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctctgcttct |
346 |
Q |
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| ||||| ||||||||||| || | | |||||| ||||| ||||| || || || || ||||||||||||||| | || || ||||| ||||| ||||| |
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| T |
36399580 |
tgattttagaaggtttaccgcaagattttagtcctgttatatctgtagtggaaagcaaatttgatgttattgacgttgacgaagttgagtctcttcttct |
36399481 |
T |
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