View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8094_high_13 (Length: 240)
Name: NF8094_high_13
Description: NF8094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8094_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 17278910 - 17279120
Alignment:
| Q |
18 |
tgaactatatccctggatttcattatgnnnnnnntgtgtcatttgttgagttcttgaatagagtgagaagcggagagttgaagcttcaatcacaagggct |
117 |
Q |
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| T |
17278910 |
tgaactatatccctggatttcattatgaaaaaaatgtgtcatttgttgagttcttgaatagagtgagaagtggagagttgaagcttcaatcacaagggct |
17279009 |
T |
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| Q |
118 |
atgggatgttcctcatccatggcttaatatgtttataccaaaatcaagaatcttagattttaatttaggtgtcttcaagaaaattattcaaaaacgtaac |
217 |
Q |
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| T |
17279010 |
atgggatgttcctcatccatggcttaatatgtttataccaaaatcaagaatcttagattttaatttaggtgtcttcaagaaaattattcaaaaacgcaac |
17279109 |
T |
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| Q |
218 |
attaccacagg |
228 |
Q |
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| T |
17279110 |
attaccacagg |
17279120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 17245884 - 17245961
Alignment:
| Q |
119 |
tgggatgttcctcatccatggcttaatatgtttataccaaaatcaagaatcttagattttaatttaggtgtcttcaag |
196 |
Q |
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| T |
17245884 |
tgggatgttcctcatccttggttgaatatgttcataccaaaatctagaatctcagattttaatgaaggtgttttcaag |
17245961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 196
Target Start/End: Original strand, 52445930 - 52446104
Alignment:
| Q |
22 |
ctatatccctggatttcattatgnnnnnnntgtgtcatttgttgagttcttgaatagagtgagaagcggagagttgaagcttcaatcacaagggctatgg |
121 |
Q |
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| T |
52445930 |
ctatatccctggacttcattatgagaaaaaggtctcatatgttgagttcttgaatagagtccgaagtggagagttgaagcttcagtcacaaggattgtgg |
52446029 |
T |
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| Q |
122 |
gatgttcctcatccatggcttaatatgtttataccaaaatcaagaatcttagattttaatttaggtgtcttcaag |
196 |
Q |
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| T |
52446030 |
gaagttcctcacccatggcttaatttatttataccaaaatctcaaatattggattttaattcaggtgtattcaag |
52446104 |
T |
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