View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8094_high_3 (Length: 489)
Name: NF8094_high_3
Description: NF8094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8094_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 12 - 489
Target Start/End: Original strand, 51912752 - 51913230
Alignment:
| Q |
12 |
gagcacagagcacaggcaggacacacgggaaatgactcttcattcggtacaccaattagtggtcattcaagctcaataacgtttggaataagacatttgg |
111 |
Q |
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| T |
51912752 |
gagcacagagcacaggcaggacacacgggaaatgactcttcattcggtacaccaattagtggtcattcaagctcaataacgtttggaataagacatttgg |
51912851 |
T |
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| Q |
112 |
aaataaccggtaattagtaataattgagaaggaagtattgttaactttgatgatgtactgcggtagaagttgctactatacagtagtttcttcttttgct |
211 |
Q |
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| T |
51912852 |
aaataaccggtaattagtaataattgagaaggaagtattgttaactttgatgatgtactgcggtagaagttgctactatacagtagtttcttcttttgct |
51912951 |
T |
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| Q |
212 |
ttttcccct-ggtttactgcacgcgtgtacgaaacagaaggaaaagaaagaaataattcacacatgggtgtgctcaatattggaaaccaaaactgactca |
310 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51912952 |
ttttccccttggtttactgcacgcgtgtacgaaacagaaggaaaagaaagaaataattcacacatgggtgtgctcaatattggaaaccaaaactaactca |
51913051 |
T |
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| Q |
311 |
agttacgttcatctcttcctttcatgaatttgcacgcttaaattttctagtgtaaacttggaaattgtagaataaaaatttgacacaattttaaaacata |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
51913052 |
agttacgttcatctcttcctttcatgaatttgcacgcttaaattttctagtgtaaacttggaaattgtagaataaaaatttgacacaattctaaaacata |
51913151 |
T |
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| Q |
411 |
atctaatcgtacttggtgcatagaattatgttatgtcatagcctgctaggttacactatcattaacgtataataataat |
489 |
Q |
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| T |
51913152 |
ctctaatcgtacttggtgcatagaattatgttatgtcatagcctgctaggttacactatcattaacgtataataataat |
51913230 |
T |
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