View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8094_high_5 (Length: 405)
Name: NF8094_high_5
Description: NF8094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8094_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 400
Target Start/End: Original strand, 16253489 - 16253872
Alignment:
| Q |
17 |
taaaaatgttggcgaatgtcgatgaatgttgtggtgcataagaattattgtcagattgtatgactgaatttagaacactagattgagcagtaaagatgtt |
116 |
Q |
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||||||||||||| |||||| |||||||||||||| |||||||||||||||| |||||||||||||| | ||||| ||| ||| ||||||| | || |
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| T |
16253489 |
taaaaatgttggcaaatgtctgtgaatgttgtggtgtataagaattattgtcacattgtatgactgaactctgaacatcagactgatcagtaaaaagatt |
16253588 |
T |
|
| Q |
117 |
ggcaaatggcggtgaatgttgtggtgtatgagaattattgtcacattgtatgactggatttttaacattttgatcaagttctggcgttgacttagcagct |
216 |
Q |
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|||||| || |||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16253589 |
tgcaaatatcgatgaatgttgtggtgcatgggaattattgtcacattgtatgactgaatttttaacattttgatcaagttctggcgttgacttagcagct |
16253688 |
T |
|
| Q |
217 |
tcaagacctaattgtgtttcagtaggaagatgacattgatcttgctttgattttttccttttaccttttggcatttcattcttcaaagcaattctcaatt |
316 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
16253689 |
tcaagacctaactgtgtttcagtaggatgatgacattgatcttgctttgattttttccacttaccttttggcatttcattcttcaaagcaattctcaatt |
16253788 |
T |
|
| Q |
317 |
tctgggaatcaatattcaaatcataatattaaatataaattacaatttaaaatcacacnnnnnnnttactatagaataatctac |
400 |
Q |
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| T |
16253789 |
tctgggaatcaatattcaaatcataatattaaatataaattacaatttaaaataacacaaaaaaattactatagaataatctac |
16253872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 16247910 - 16248264
Alignment:
| Q |
17 |
taaaaatgttggcgaatgtcgatgaatgttgtggtgcataagaattattgtcagattgtatgactgaatttagaacactagattgagcagtaaagatgtt |
116 |
Q |
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||||||||||||| |||||| ||||||||||||||||| ||||||||||||| ||| |||||||||||| ||||| ||||||| ||||||| | ||| |
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| T |
16247910 |
taaaaatgttggcaaatgtctttgaatgttgtggtgcatgagaattattgtcacattctatgactgaattatgaacatcagattgatcagtaaaaaggtt |
16248009 |
T |
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| Q |
117 |
ggcaaatggcggtgaatgttgtggtgtatgagaattattgtcacattgtatgactggatttttaacattttgatcaagttctggcgttgacttagcagct |
216 |
Q |
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|||||| || |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
16248010 |
tgcaaatatcgatgaatgttgtggtgcatgagaattattgtcacattgtatgactggagttttaacattttgatcaagttctggcgttgacttagcagct |
16248109 |
T |
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| Q |
217 |
tcaagacctaattgtgtttcagtaggaagatgacattgatcttgctttgattttttccttttaccttttggcatttcattcttcaaagcaattctcaatt |
316 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||| ||| ||||| |||||| ||||||||||||||||||||||| |||| || |||||||| |
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| T |
16248110 |
tcaagacctaattgtgtttcagcaggaagatgacattaatcctgc-ttgatgttttccacttaccttttggcatttcattctttaaagtaagtctcaatt |
16248208 |
T |
|
| Q |
317 |
tctgggaatcaatattcaaatcataatattaaatataaattacaatttaaaatcaca |
373 |
Q |
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| T |
16248209 |
tatgcgaatcaatattcaaatcataatattaaatataaattacaa-ttaaaatcaca |
16248264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 16253399 - 16253554
Alignment:
| Q |
17 |
taaaaatgttggcgaatgtcgatgaatgttgtggtgcataagaattattgtcagattgtatgactgaatttagaacactagattgagcagtaaagatgtt |
116 |
Q |
| |
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|||| |||||||| |||| || ||||||||||||||||| ||||||||||||| ||||||| || |||| ||||| |||||||| |||||| ||||| |
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| T |
16253399 |
taaagatgttggcaaatggcggtgaatgttgtggtgcatgagaattattgtcacattgtataacaaaattctgaacattagattgatgagtaaaaatgtt |
16253498 |
T |
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| Q |
117 |
ggcaaatggcggtgaatgttgtggtgtatgagaattattgtcacattgtatgactg |
172 |
Q |
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|||||||| | |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16253499 |
ggcaaatgtctgtgaatgttgtggtgtataagaattattgtcacattgtatgactg |
16253554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 16253374 - 16253459
Alignment:
| Q |
82 |
gaatttagaacactagattgagcagtaaagatgttggcaaatggcggtgaatgttgtggtgtatgagaattattgtcacattgtat |
167 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16253374 |
gaatttagaacactagactgagcagtaaagatgttggcaaatggcggtgaatgttgtggtgcatgagaattattgtcacattgtat |
16253459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 16247731 - 16247883
Alignment:
| Q |
17 |
taaaaatgttggcgaatgtcgatgaatgttgtggtgcataagaattattgtcagattgtatgactgaatttagaacactagattgagcagtaaagatgtt |
116 |
Q |
| |
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|||| |||||||| ||||||| ||||||||||||||||| ||||||||||||| |||||||||||| ||| | |||| |||| ||| ||||| | ||||| |
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| T |
16247731 |
taaagatgttggcaaatgtcggtgaatgttgtggtgcatgagaattattgtcacattgtatgactg-attcataacattagaatgatcagtacaaatgtt |
16247829 |
T |
|
| Q |
117 |
ggcaaatggcggtgaatgttgtggtgtatgagaattattgtcacattgtatgac |
170 |
Q |
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| |||| ||||||||||||| ||| |||| |||||||||||||||||||||| |
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| T |
16247830 |
agtcaatgtcggtgaatgttgttgtgcatgataattattgtcacattgtatgac |
16247883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 31 - 172
Target Start/End: Original strand, 16247834 - 16247975
Alignment:
| Q |
31 |
aatgtcgatgaatgttgtggtgcataagaattattgtcagattgtatgactgaatttagaacactagattgagcagtaaagatgttggcaaatggcggtg |
130 |
Q |
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||||||| |||||||||| |||||| | ||||||||||| |||||||||| |||| |||| |||| ||| |||||| ||||||||||||| | || |
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| T |
16247834 |
aatgtcggtgaatgttgttgtgcatgataattattgtcacattgtatgacaaaattctaaacattagactgatgagtaaaaatgttggcaaatgtctttg |
16247933 |
T |
|
| Q |
131 |
aatgttgtggtgtatgagaattattgtcacattgtatgactg |
172 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||| |
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| T |
16247934 |
aatgttgtggtgcatgagaattattgtcacattctatgactg |
16247975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 16247724 - 16247796
Alignment:
| Q |
100 |
tgagcagtaaagatgttggcaaatggcggtgaatgttgtggtgtatgagaattattgtcacattgtatgactg |
172 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16247724 |
tgagaagtaaagatgttggcaaatgtcggtgaatgttgtggtgcatgagaattattgtcacattgtatgactg |
16247796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 16253335 - 16253378
Alignment:
| Q |
19 |
aaaatgttggcgaatgtcgatgaatgttgtggtgcataagaatt |
62 |
Q |
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| T |
16253335 |
aaaatgttgccgaatgtcgatgaatgttgtggtgcataagaatt |
16253378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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