View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8094_low_1 (Length: 618)
Name: NF8094_low_1
Description: NF8094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8094_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 287 - 586
Target Start/End: Complemental strand, 41911510 - 41911211
Alignment:
| Q |
287 |
catatcctacgtaatgttcaaatatgtatatccctatattattaagccaagattaaacagtcgcttttggatttactatcatatttctccaacctatctt |
386 |
Q |
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| T |
41911510 |
catatcctacgtaatgttcaaatatgtatatccctatattattaagccaagattaaacagtcgcttttggatttactatcatatttctccaacctatctt |
41911411 |
T |
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| Q |
387 |
ttgaatattcaaaagaattcgataagatatatgaccttttttctttaaatcaattaatgtgcacttaattagattgatatgatggatttgttttataatg |
486 |
Q |
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| T |
41911410 |
ttgaatattgaaaagaattcgataagatatatgaccttttttctttaaatcaataaatgtgcacttaattagattgatatgatagatttgttttataatg |
41911311 |
T |
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| Q |
487 |
catgtcacctttggtctaatttaatgatggtcaaataattaaagtgaaagaagtgaatgagtttacgtctgatgtttatattagaaacgaataatatgca |
586 |
Q |
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| T |
41911310 |
tatgtcacctttggtctaatttaatcatggtcaaataattaaagtgaaagaagtgaatgagtttacgtctgatgtttttattagaaacgaataatatgca |
41911211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 41911757 - 41911571
Alignment:
| Q |
20 |
aattaacttatttttctgggtaaggagtcattgtacatcacaatcatacatagttaaggatttgctgccataagataagaccaatatccatggctggaac |
119 |
Q |
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| T |
41911757 |
aattaacttatttttctgggtaaggagtcattgtacatcacaatcatacatagttaaggatttgctgccataagat-------------------ggaac |
41911677 |
T |
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| Q |
120 |
caacagtttgtaatatgcataacagccaagtgccaaagacttctgcacagaaacctcttgaaagatgcgattcattttgtgtctccgtgaaatcaattaa |
219 |
Q |
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| T |
41911676 |
-aacagtttgtaat--gcataacagccaagtgccaaagacttctgcacagaaacctcttgaaagatgcgattcattttgtgtctccgtgaaatcaattaa |
41911580 |
T |
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