View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8094_low_12 (Length: 252)
Name: NF8094_low_12
Description: NF8094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8094_low_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 51913244 - 51913479
Alignment:
| Q |
1 |
agcttttactgggtgggactaattaatctcatcataatgcaatgtcaccctttacaacgtcaacaacatcccacagctccaaacagctgctttctttctg |
100 |
Q |
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| T |
51913244 |
agcttttactgggtgggactaattaatctcatcataatgcaatgtcaccctttacaacgtcaacaa----------------acagctgctttctttctg |
51913327 |
T |
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| Q |
101 |
tcgttttcttttttaaacagggctaggctactgctattgggcttaaatgatacagtaacttatccaaatcttcatagaattgtccatgtaaaagcaattg |
200 |
Q |
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| T |
51913328 |
tcgttttcttttttaaatagggctaggctactgctattgggcttaaatgatacagtaacttatccaaatcttcatagaattgtccatgtaaaagcaattg |
51913427 |
T |
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| Q |
201 |
ggctcctaacttggtgttgtttgttgctccacgtaatactgccaaattcaga |
252 |
Q |
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| T |
51913428 |
ggctcctaacttggtgttgtttgttgctccacgtaatactgccaaattcaga |
51913479 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 26170383 - 26170322
Alignment:
| Q |
183 |
tccatgtaaaagcaattgggctcctaacttggtgttgtttgttgctccacgtaatactgccaa |
245 |
Q |
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| T |
26170383 |
tccatgtaaaagcaattgagctc-taccttggttttgtttgttgatccacctaatactgccaa |
26170322 |
T |
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