View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8094_low_2 (Length: 452)
Name: NF8094_low_2
Description: NF8094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8094_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 257 - 436
Target Start/End: Complemental strand, 52550252 - 52550073
Alignment:
| Q |
257 |
ctgagttgcaaaattttattatgagtatttaacaactattataaaatcctttcattttaaaaattctctaaatttatattgaaacaataaaatttacata |
356 |
Q |
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| T |
52550252 |
ctgagttgcaaaattttattatgagtatttaacaagtattataaaatcctttcattttaaaaattctctaaatttatattgaaacaatgaaatttacata |
52550153 |
T |
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| Q |
357 |
gaagaatatgaagtaccctataaaattacatacatcaaaacattattctctcatttaaacacgctattagagtaaaatat |
436 |
Q |
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| T |
52550152 |
gaagaatatgaattaacctataaaattacatacatcaaaacattattctctcatttaaacacgctataagagtaaaatat |
52550073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 52550490 - 52550311
Alignment:
| Q |
13 |
attctgtattgtataacattattattggaaaatgacaataatgcttagactatatactcaaatgtcttctttttatatatatttgatatatgcagtggat |
112 |
Q |
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| T |
52550490 |
attctgtattatataacattattattggaaaatgacaataatgcttagactatatactcaaaggtcttctttt---atatatttgatatatgcagtggat |
52550394 |
T |
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| Q |
113 |
ttccagtttggctcaagtatgttccgggcattgcattcagaacagacaaccaacctttcaaggttggaaacttagaatttcaa |
195 |
Q |
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| T |
52550393 |
ttccagtttggctcaagtatgttccgggcattgcattcagaacagacaaccagccttttaaggttggaaacttagaatttcaa |
52550311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 5229913 - 5229971
Alignment:
| Q |
103 |
tgcagtggatttccagtttggctcaagtatgttccgggcattgcattcagaacagacaa |
161 |
Q |
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| T |
5229913 |
tgcagaggatttcctgtttggctcaagtatgttcctgggatggctttcagaacagacaa |
5229971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 17124827 - 17124905
Alignment:
| Q |
101 |
tatgcagtggatttccagtttggctcaagtatgttccgggcattgcattcagaacagacaaccaacctttcaaggttgg |
179 |
Q |
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| T |
17124827 |
tatgcaggggatttcctgtttggctaaagtatgtaccaggtgttgctttcagaacagacaatgagccgttcaaggttgg |
17124905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 34660363 - 34660399
Alignment:
| Q |
297 |
ataaaatcctttcattttaaaaattctctaaatttat |
333 |
Q |
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| T |
34660363 |
ataaaaccctttcattttaaaaattctccaaatttat |
34660399 |
T |
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