View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8094_low_3 (Length: 406)
Name: NF8094_low_3
Description: NF8094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8094_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 75 - 374
Target Start/End: Complemental strand, 41911510 - 41911211
Alignment:
| Q |
75 |
catatcctacgtaatgttcaaatatgtatatccctatattattaagccaagattaaacagtcgcttttggatttactatcatatttctccaacctatctt |
174 |
Q |
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| T |
41911510 |
catatcctacgtaatgttcaaatatgtatatccctatattattaagccaagattaaacagtcgcttttggatttactatcatatttctccaacctatctt |
41911411 |
T |
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| Q |
175 |
ttgaatattcaaaagaattcgataagatatatgaccttttttctttaaatcaattaatgtgcacttaattagattgatatgatggatttgttttataatg |
274 |
Q |
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| T |
41911410 |
ttgaatattgaaaagaattcgataagatatatgaccttttttctttaaatcaataaatgtgcacttaattagattgatatgatagatttgttttataatg |
41911311 |
T |
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| Q |
275 |
catgtcacctttggtctaatttaatgatggtcaaataattaaagtgaaagaagtgaatgagtttacgtctgatgtttatattagaaacgaataatatgca |
374 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41911310 |
tatgtcacctttggtctaatttaatcatggtcaaataattaaagtgaaagaagtgaatgagtttacgtctgatgtttttattagaaacgaataatatgca |
41911211 |
T |
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