View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8094_low_4 (Length: 291)
Name: NF8094_low_4
Description: NF8094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8094_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 24562196 - 24562413
Alignment:
| Q |
17 |
acatcagccgcactattagtaacccatcaaccacacacaattagaaaacaaccacacttaagcatatgaaacaaataagcacacaattgcacccaaacac |
116 |
Q |
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| T |
24562196 |
acatcagccgcactattagtaacccatcaaccacacacaattagaaaacaaccacacttaagcatatgaaacaaataagcacacaattgcacccaaacac |
24562295 |
T |
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| Q |
117 |
gccgtccattaaaatttacagacacatagtagcaaagaaaatggattcaagtacaacagttacaaaacgaccatacacaattgcaaaaacagaaaggacc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24562296 |
gccgtccattaaaatttacagacacatagtagcaaagaaaatggattcaagtacaacagttacaaaacgaccatacacgattgcaaaaacagaaaggacc |
24562395 |
T |
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| Q |
217 |
acataagaaatgacaccg |
234 |
Q |
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|||||||||||||||||| |
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| T |
24562396 |
acataagaaatgacaccg |
24562413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 36805067 - 36805117
Alignment:
| Q |
224 |
aaatgacaccgtactagtactacctcttgaggactctcatgattttgttcc |
274 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36805067 |
aaatgacaccgtactagcactacctcttgaggactctcatgattttgttcc |
36805117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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