View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8094_low_6 (Length: 246)
Name: NF8094_low_6
Description: NF8094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8094_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 32319488 - 32319712
Alignment:
| Q |
9 |
agcagagaacttatcattcgagatgttccaaaaccgaggatcactcctcaagtagttggaccatctctagaagaggcagccacaagacttgataatgaac |
108 |
Q |
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| T |
32319488 |
agcacagaacttatcattcgagatattccaaaaccaaggatcactcctcaagtagttggaccatctctagaagaggcagccacaagacttgataatgaac |
32319587 |
T |
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| Q |
109 |
attgtttggtgctttgtttgggtgattcatcatcatatgcctctaacaatgtttccgacact---caacctaatgcacaagcatcaggaagttttcttct |
205 |
Q |
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| T |
32319588 |
attgtttggtgctttgtttgggcgattcatcatcagacgcctctaacaatgtttccgacactcaacaacctaatgcacaagcatcaggaagttttcttct |
32319687 |
T |
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| Q |
206 |
taggcaagaaaactcgactcctatt |
230 |
Q |
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||||||||||||||||||||||||| |
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| T |
32319688 |
taggcaagaaaactcgactcctatt |
32319712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 225
Target Start/End: Original strand, 32366371 - 32366575
Alignment:
| Q |
21 |
atcattcgagatgttccaaaaccgaggatcactcctcaagtagttggaccatctctagaagaggcagccacaagacttgataatgaacattgtttggtgc |
120 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||| ||| |||||||||| ||||||||||||||| |||||| | | |
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| T |
32366371 |
atcattcgagatgttccaaaatcgaggatcactcctcaagtacttggacgatctctagcagaagcagccacaaaacttgataatgaacaatgtttgatac |
32366470 |
T |
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| Q |
121 |
tttgtttgggtgattcatcatcatatgcctctaacaatgtttccgacactcaacctaatgcacaagcatcaggaagttttcttcttaggcaagaaaactc |
220 |
Q |
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| T |
32366471 |
tttgtttgggcgattcatcatcatacgcctctaacaatgtttccgacactcaacctaatgcacaagcatcaggaagttttcttcctacacaagaaaactt |
32366570 |
T |
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| Q |
221 |
gactc |
225 |
Q |
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||||| |
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| T |
32366571 |
gactc |
32366575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 45 - 227
Target Start/End: Complemental strand, 32311856 - 32311670
Alignment:
| Q |
45 |
aggatcactcctcaagtagttggaccatctctagaagaggcagccacaagacttgataatgaacattgtttggtgctttgtttgggtgattcatcatcat |
144 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| |||||||||| ||||| | |||||||| || ||||||||||||| |
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| T |
32311856 |
aggatcactcctcaagttgttggaccatctctagcagaggcagcaacaagacttaataatgaacaatgttttatactttgtttcggcgattcatcatcat |
32311757 |
T |
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| Q |
145 |
atgcct----ctaacaatgtttccgacactcaacctaatgcacaagcatcaggaagttttcttcttaggcaagaaaactcgactcct |
227 |
Q |
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| T |
32311756 |
aggcctataattaacaatgtttccgacattgaacctaatccacatgcatcaagagggtttcttcctaggcaaggaaactcgactcct |
32311670 |
T |
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