View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8094_low_7 (Length: 391)

Name: NF8094_low_7
Description: NF8094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8094_low_7
NF8094_low_7
[»] chr7 (9 HSPs)
chr7 (11-228)||(49170058-49170275)
chr7 (11-160)||(12196451-12196600)
chr7 (97-228)||(12911571-12911702)
chr7 (11-108)||(10288546-10288643)
chr7 (11-106)||(12911448-12911543)
chr7 (60-200)||(22077896-22078040)
chr7 (11-79)||(40106193-40106261)
chr7 (11-67)||(15873730-15873786)
chr7 (11-54)||(22078083-22078127)
[»] chr4 (11 HSPs)
chr4 (11-228)||(55162388-55162605)
chr4 (93-199)||(40459186-40459288)
chr4 (11-106)||(40459307-40459402)
chr4 (106-200)||(28969072-28969167)
chr4 (22-88)||(28969010-28969076)
chr4 (60-106)||(69712-69758)
chr4 (11-44)||(69782-69815)
chr4 (11-106)||(13652889-13652986)
chr4 (11-106)||(13661014-13661111)
chr4 (60-106)||(69676-69722)
chr4 (11-45)||(2761815-2761849)
[»] chr5 (13 HSPs)
chr5 (11-201)||(40691136-40691326)
chr5 (95-186)||(30910038-30910129)
chr5 (11-106)||(30910155-30910249)
chr5 (11-102)||(38001343-38001432)
chr5 (60-106)||(6309116-6309162)
chr5 (11-44)||(6309186-6309219)
chr5 (11-67)||(537215-537271)
chr5 (60-99)||(6309051-6309090)
chr5 (60-103)||(6309083-6309126)
chr5 (11-45)||(25101635-25101669)
chr5 (11-45)||(25160728-25160762)
chr5 (11-45)||(42861832-42861866)
chr5 (71-106)||(27026850-27026886)
[»] chr1 (12 HSPs)
chr1 (14-228)||(8421800-8422010)
chr1 (11-200)||(9537146-9537335)
chr1 (89-228)||(338310-338449)
chr1 (11-103)||(33007406-33007498)
chr1 (11-108)||(43407122-43407219)
chr1 (11-98)||(338472-338559)
chr1 (11-67)||(37666933-37666989)
chr1 (11-106)||(18472643-18472739)
chr1 (11-108)||(16075095-16075193)
chr1 (11-106)||(25921843-25921939)
chr1 (60-106)||(6836294-6836340)
chr1 (11-44)||(6836394-6836427)
[»] chr2 (13 HSPs)
chr2 (11-200)||(40729182-40729370)
chr2 (89-228)||(40447683-40447822)
chr2 (89-201)||(36732025-36732137)
chr2 (11-106)||(18292449-18292544)
chr2 (11-106)||(34397574-34397667)
chr2 (11-98)||(40447845-40447932)
chr2 (119-189)||(18292605-18292674)
chr2 (11-74)||(41340008-41340071)
chr2 (60-106)||(44788932-44788978)
chr2 (14-54)||(28266870-28266910)
chr2 (11-45)||(12774147-12774181)
chr2 (11-45)||(35670507-35670541)
chr2 (11-44)||(44789002-44789035)
[»] scaffold1838 (1 HSPs)
scaffold1838 (11-201)||(444-637)
[»] chr8 (10 HSPs)
chr8 (229-334)||(41781461-41781566)
chr8 (11-106)||(44436478-44436573)
chr8 (11-67)||(41958177-41958233)
chr8 (62-106)||(44436442-44436486)
chr8 (11-45)||(22635738-22635772)
chr8 (10-44)||(22816030-22816064)
chr8 (62-103)||(44436409-44436450)
chr8 (119-186)||(44436323-44436389)
chr8 (69-106)||(3189211-3189248)
chr8 (11-54)||(40841232-40841276)
[»] chr3 (8 HSPs)
chr3 (11-108)||(7336449-7336546)
chr3 (11-67)||(5004475-5004531)
chr3 (11-55)||(16975727-16975771)
chr3 (27-106)||(8731160-8731240)
chr3 (27-106)||(9083047-9083127)
chr3 (11-54)||(9104588-9104632)
chr3 (60-100)||(17542468-17542508)
chr3 (11-67)||(46404356-46404412)
[»] scaffold0041 (1 HSPs)
scaffold0041 (131-200)||(33190-33259)
[»] chr6 (3 HSPs)
chr6 (11-67)||(10751315-10751371)
chr6 (11-55)||(23260369-23260413)
chr6 (11-67)||(34636582-34636638)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 49170058 - 49170275
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacagaatataattataacccgccactaaggcaatta 110  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  49170058 cacagatgcatatgccatgcatgatcatgaaaatgcagactaaaatccgccactaagacaccacacagaatataattacaacccgccactaaggcaatta 49170157  T
Q  111 cagtcaagtattaatgcatcatcaagcacacaaaccaaaagtcaatcatttcataaactcacattttcatctttctcttctttaattcatcnnnnnnntg 210  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       ||    
T  49170158 cattcaagtattaatgcatcatcaagcacacaaaccaaaagtcaatcatttcacaaactcacattttcatctttctcttctttaattcatcaaaaaaatg 49170257  T
Q  211 taacatttcttttccaac 228  Q
    ||||||||||||||||||    
T  49170258 taacatttcttttccaac 49170275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 12196451 - 12196600
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacaga-atataattataacccgccactaaggcaatt 109  Q
    |||||||| |||||||||| ||||||||||||||| |||||||| ||| |||||||| ||||||||||| |||||||  |||||| ||||||||||||||    
T  12196451 cacagatgaatatgccatgtatgatcatgaaaatgcagactaaagtccgccactaaggcaccacacagatatataatattaacccaccactaaggcaatt 12196550  T
Q  110 acagtcaagtattaatgcatcatcaagcacacaaaccaaaagtcaatcatt 160  Q
    |||| ||| |||||| |||||||||  ||||| |||||| |||||||||||    
T  12196551 acagccaaatattaacgcatcatcagacacac-aaccaacagtcaatcatt 12196600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 97 - 228
Target Start/End: Original strand, 12911571 - 12911702
Alignment:
Q  97 cactaaggcaattacagtcaagtattaatgcatcatcaagcacacaaaccaaaagtcaatcatttcataaactcacattttcatctttc--tcttcttta 194  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||  |||  | |||||||    
T  12911571 cactaaggcaattacagtcaaatattaatgcatcatcaagtacacaaaccaaaagtcaatcatttcacaaactcacattttcatagttcttttttcttta 12911670  T
Q  195 attcatcnnnnnnntgtaacatttcttttccaac 228  Q
    |||||||       ||||||||||||||||||||    
T  12911671 attcatc--aaaaatgtaacatttcttttccaac 12911702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 10288546 - 10288643
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacagaatataattataacccgccactaaggcaat 108  Q
    ||||||||||||||||||||||||||||||||||| | ||||||| || |||||||| ||||||||| |||||||||||||||| ||||| |||||||    
T  10288546 cacagatgcatatgccatgcatgatcatgaaaatgcaaactaaaacccgccactaaggcaccacacaaaatataattataacccaccacttaggcaat 10288643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 12911448 - 12911543
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacagaatataattataacccgccactaaggca 106  Q
    |||||||||||||||||| |||||| ||||||||| ||||||||| || ||||||||  ||||||||||||||||||||||||||||||| |||||    
T  12911448 cacagatgcatatgccatacatgattatgaaaatgcagactaaaacccgccactaaggtaccacacagaatataattataacccgccacttaggca 12911543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 60 - 200
Target Start/End: Complemental strand, 22078040 - 22077896
Alignment:
Q  60 ccactaagacaccacacaga-atataattataacccgccactaaggcaattaca--gtcaagtattaatgcatcatcaagcacacaaaccaaaagtcaat 156  Q
    |||||||| ||||||| ||| ||||| |  ||||||||||||||||||| | ||  ||||| |||||| |||||||||| ||||||| ||||||||| ||    
T  22078040 ccactaaggcaccacaaagagatatattattaacccgccactaaggcaaatgcatagtcaaatattaacgcatcatcaaacacacaa-ccaaaagtccat 22077942  T
Q  157 catttcataaactcacattttcatctttctc--ttctttaattcat 200  Q
    ||||||| |||||||||||||||||||||||  |||||||||||||    
T  22077941 catttcacaaactcacattttcatctttctcttttctttaattcat 22077896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 40106261 - 40106193
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacaga 79  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||    
T  40106261 cacagatgcatatgccatgcatgatcatgaaaatgcagactaaaatccgccactaaggcaccacacaga 40106193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 15873730 - 15873786
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaag 67  Q
    ||||||||||||||||||||| || |||||||||| | ||||||| || ||||||||    
T  15873730 cacagatgcatatgccatgcacgaacatgaaaatgcacactaaaacccgccactaag 15873786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 22078127 - 22078083
Alignment:
Q  11 cacagatgcatatgcca-tgcatgatcatgaaaatgtagactaaa 54  Q
    ||||||||||||||| | |||||||||||||||||| ||||||||    
T  22078127 cacagatgcatatgctaatgcatgatcatgaaaatgaagactaaa 22078083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 55162605 - 55162388
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacagaatataattataacccgccactaaggcaatta 110  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||  ||| ||| |||||||||||||||||| | ||||||||||||| |||||||    
T  55162605 cacagatgcatatgccatgcatgatcatgaaaatgcagactaaaatccgtcaccaaggcaccacacagaatataatcacaacccgccactaatgcaatta 55162506  T
Q  111 cagtcaagtattaatgcatcatcaagcacacaaaccaaaagtcaatcatttcataaactcacattttcatctttctcttctttaattcatcnnnnnnntg 210  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       ||    
T  55162505 cagttaagtattaatgcatcatcaagcacacaaaccaaaagtcaatcatttcacaaactcacattttcatctttctcttctttaattcatcaaaaaaatg 55162406  T
Q  211 taacatttcttttccaac 228  Q
    ||||||||||||||||||    
T  55162405 taacatttcttttccaac 55162388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 93 - 199
Target Start/End: Complemental strand, 40459288 - 40459186
Alignment:
Q  93 ccgccactaaggcaattacagtcaagtattaatgcatcatcaagcacacaaaccaaaagtcaatcatttcataaactcacattttcatctttctcttctt 192  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    ||||||||||||||    
T  40459288 ccgccactaaggcaattacattcaagtattaatgcatcatcaagcacacaaaccaaaagtcaatcatttcacaaactcatat----atctttctcttctt 40459193  T
Q  193 taattca 199  Q
    |||||||    
T  40459192 taattca 40459186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 40459402 - 40459307
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacagaatataattataacccgccactaaggca 106  Q
    |||||||||||||| |||||||||||||||||||| |  |||||| || |||||||| ||| ||| |||||||||||||||||||||||| |||||    
T  40459402 cacagatgcatatgacatgcatgatcatgaaaatgcaacctaaaacccgccactaaggcacaacatagaatataattataacccgccacttaggca 40459307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 106 - 200
Target Start/End: Original strand, 28969072 - 28969167
Alignment:
Q  106 aattacagtcaagtattaatgcatcatcaagcacacaaaccaaaagtcaatcatttcataaactcacattttcatctttctc--ttctttaattcat 200  Q
    ||||||| |||| ||||||  |||||| || ||||||| ||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  28969072 aattacactcaaatattaactcatcatgaaacacacaa-ccaaaagtcaatcatttcacaaactcacattttcatctttctcttttctttaattcat 28969167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 28969010 - 28969076
Alignment:
Q  22 atgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacagaatataatta 88  Q
    |||||||||||||||||||||||| ||| ||||| | ||||||||| ||||||||||||||||||||    
T  28969010 atgccatgcatgatcatgaaaatgcagattaaaacctaccactaaggcaccacacagaatataatta 28969076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 69758 - 69712
Alignment:
Q  60 ccactaagacaccacacagaatataattataacccgccactaaggca 106  Q
    |||||||| ||||||||||||||||||  ||||||||||||||||||    
T  69758 ccactaaggcaccacacagaatataatcgtaacccgccactaaggca 69712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 69815 - 69782
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaat 44  Q
    ||||||||||||||||||||||||||||||||||    
T  69815 cacagatgcatatgccatgcatgatcatgaaaat 69782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 13652986 - 13652889
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatg-tagactaaaatccaccactaagacaccacacagaat-ataattataacccgccactaaggca 106  Q
    |||| |||||||| |||||||||||||||||||||  ||||||||| || ||||| ||  |||||| ||||| |||| | ||||||||||| ||||||    
T  13652986 cacaaatgcatataccatgcatgatcatgaaaatgcaagactaaaacccgccacttaggtaccacaaagaataataagtttaacccgccacaaaggca 13652889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 13661111 - 13661014
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatg-tagactaaaatccaccactaagacaccacacagaat-ataattataacccgccactaaggca 106  Q
    |||| |||||||| |||||||||||||||||||||  ||||||||| || ||||| ||  |||||| ||||| |||| | ||||||||||| ||||||    
T  13661111 cacaaatgcatataccatgcatgatcatgaaaatgcaagactaaaacccgccacttaggtaccacaaagaataataagtttaacccgccacaaaggca 13661014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 69722 - 69676
Alignment:
Q  60 ccactaagacaccacacagaatataattataacccgccactaaggca 106  Q
    |||||||| ||||||||||||||||||  |||||||||||| |||||    
T  69722 ccactaaggcaccacacagaatataatagtaacccgccacttaggca 69676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 2761815 - 2761849
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatg 45  Q
    |||| ||||||||||||||||||||||||||||||    
T  2761815 cacaaatgcatatgccatgcatgatcatgaaaatg 2761849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 5e-75; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 11 - 201
Target Start/End: Complemental strand, 40691326 - 40691136
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacagaatataattataacccgccactaaggcaatta 110  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| ||  ||||||| ||||||||| |||||||| | ||||||||||||||||||||     
T  40691326 cacagatgcatatgccttgcatgatcatgaaaatgcagactaaaacccgtcactaaggcaccacacataatataatcacaacccgccactaaggcaattc 40691227  T
Q  111 cagtcaagtattaatgcatcatcaagcacacaaaccaaaagtcaatcatttcataaactcacattttcatctttctcttctttaattcatc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  40691226 cagtcaagtattaatgcatcatcaagcacacaaaccaaaagtcaatcatttcacaaactcacattttcatctttttcttctttaattcatc 40691136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 95 - 186
Target Start/End: Complemental strand, 30910129 - 30910038
Alignment:
Q  95 gccactaaggcaattacagtcaagtattaatgcatcatcaagcacacaaaccaaaagtcaatcatttcataaactcacattttcatctttct 186  Q
    |||||||||||||||||| |||||||||||||||| |||||| ||||||||||||| |||||||||||| |||| |||||||||||| ||||    
T  30910129 gccactaaggcaattacaatcaagtattaatgcatgatcaagtacacaaaccaaaattcaatcatttcacaaacacacattttcatcgttct 30910038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 30910249 - 30910155
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacagaatataattataacccgccactaaggca 106  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||||| ||||||||| |||||||||||||||||||||| |||||    
T  30910249 cacagatgcatatgccatgcatgatcatggaaatgcagactaaa-tccgccactaaggcaccacacataatataattataacccgccacttaggca 30910155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 38001432 - 38001343
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacagaatataattataacccgccactaa 102  Q
    |||||||||||||| |||||  ||||||||||||| ||| ||||| || ||||||||||||||||||||||||||||||||| |||||||||    
T  38001432 cacagatgcatatgtcatgc--gatcatgaaaatgcagattaaaacccgccactaagacaccacacagaatataattataactcgccactaa 38001343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 6309162 - 6309116
Alignment:
Q  60 ccactaagacaccacacagaatataattataacccgccactaaggca 106  Q
    |||||||| ||||||||||||||||||  ||||||||||||||||||    
T  6309162 ccactaaggcaccacacagaatataatagtaacccgccactaaggca 6309116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 6309219 - 6309186
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaat 44  Q
    ||||||||||||||||||||||||||||||||||    
T  6309219 cacagatgcatatgccatgcatgatcatgaaaat 6309186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 537271 - 537215
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaag 67  Q
    ||||||||||||||||||||| || |||||||||| | ||||||| || ||||||||    
T  537271 cacagatgcatatgccatgcacgaacatgaaaatgcacactaaaacccgccactaag 537215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 6309090 - 6309051
Alignment:
Q  60 ccactaagacaccacacagaatataattataacccgccac 99  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  6309090 ccactaagacaccacacagaatataatagtaacccgccac 6309051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 6309126 - 6309083
Alignment:
Q  60 ccactaagacaccacacagaatataattataacccgccactaag 103  Q
    |||||||| ||||||||||||||||||  |||||||||||||||    
T  6309126 ccactaaggcaccacacagaatataatagtaacccgccactaag 6309083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 25101635 - 25101669
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatg 45  Q
    ||||||||||||| |||||||||||||||||||||    
T  25101635 cacagatgcatataccatgcatgatcatgaaaatg 25101669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 25160728 - 25160762
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatg 45  Q
    ||||||||||||| |||||||||||||||||||||    
T  25160728 cacagatgcatataccatgcatgatcatgaaaatg 25160762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 42861866 - 42861832
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatg 45  Q
    ||||||||||||||| |||||||||||||||||||    
T  42861866 cacagatgcatatgctatgcatgatcatgaaaatg 42861832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 106
Target Start/End: Complemental strand, 27026886 - 27026850
Alignment:
Q  71 ccacacagaatataattataa-cccgccactaaggca 106  Q
    ||||||||||||||||||||| |||||||||||||||    
T  27026886 ccacacagaatataattataatcccgccactaaggca 27026850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 8422010 - 8421800
Alignment:
Q  14 agatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacagaatataattataacccgccactaaggcaattacag 113  Q
    |||||||||||||||||||||||||||||||| ||||||||| || || ||||| |||||||||||||||||| | |||| |||||||||| ||||||||    
T  8422010 agatgcatatgccatgcatgatcatgaaaatgcagactaaaacccgccgctaaggcaccacacagaatataatcacaacctgccactaaggtaattacag 8421911  T
Q  114 tcaagtattaatgcatcatcaagcacacaaaccaaaagtcaatcatttcataaactcacattttcatctttctcttctttaattcatcnnnnnnntgtaa 213  Q
        ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||       |||||    
T  8421910 ----gtattaatgcatcatcaagcacacaaaccaaaagtcagtcatttcacaaactcacattttcatctttctcttctttaattaatcaaaaaaatgtaa 8421815  T
Q  214 catttcttttccaac 228  Q
    |||||||||||||||    
T  8421814 catttcttttccaac 8421800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 9537146 - 9537335
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacagaatataattataacccgccactaaggcaatta 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||| ||||||    
T  9537146 cacaaatgcatatgccatgcatgatcatgaaaatgtagactaaaacccgccactaaggcaccacacagaatataattataacccgccgctaagacaatta 9537245  T
Q  111 cagtcaagtattaatgcatcatcaagcacacaaaccaaaagtcaatcatttcataaactcacattttcatctttctc--ttctttaattcat 200  Q
    || |||| || ||| ||||  |||| ||| | ||||||||||| ||||||||| |||||||||||||||||||||||  |||||||||||||    
T  9537246 caatcaaata-taacgcatggtcaaacacgc-aaccaaaagtccatcatttcacaaactcacattttcatctttctcttttctttaattcat 9537335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 89 - 228
Target Start/End: Complemental strand, 338449 - 338310
Alignment:
Q  89 taacccgccactaaggcaattacagtcaagtattaatgcatcatcaagcacacaaaccaaaagtcaatcatttcataaactcacattttcatctttctct 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||    
T  338449 taacccgccactaaggcaattacagtcaagtattaatgcatcatcaagtacacaaaccaaaagtcaatcatttcacaaactcacattctcatctttttct 338350  T
Q  189 tctttaattcatcnnnnnnntgtaacatttcttttccaac 228  Q
    |||||||||||||       ||||||||||||||||||||    
T  338349 tctttaattcatcaagaaaatgtaacatttcttttccaac 338310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 33007406 - 33007498
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacagaatataattataacccgccactaag 103  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||    
T  33007406 cacagatgcatatgctatgcatgattatgaaaatgtagactaaaatccaccacgaagacaccacatagaatataattataacccgcaactaag 33007498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 43407122 - 43407219
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacagaatataattataacccgccactaaggcaat 108  Q
    ||||||||||||||||||||||||||||||||||| | ||||||| || |||||||| ||||||||| |||||||||||||||| ||||| |||||||    
T  43407122 cacagatgcatatgccatgcatgatcatgaaaatgcaaactaaaacccgccactaaggcaccacacaaaatataattataacccaccacttaggcaat 43407219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 338559 - 338472
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacagaatataattataacccgcca 98  Q
    |||||||||||||| |||||||||||||||||||| | ||||||| || |||||||| ||||||||| ||||||||||||||||||||    
T  338559 cacagatgcatatgacatgcatgatcatgaaaatgcaaactaaaacccgccactaaggcaccacacaaaatataattataacccgcca 338472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 37666933 - 37666989
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaag 67  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||    
T  37666933 cacagatgcatatgacatgcatgatcatgaaaatgcagactaaaatccgccactaag 37666989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 18472643 - 18472739
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacagaa-tataattataacccgccactaaggca 106  Q
    ||||||||||||||| ||||||||||||||||||| |   | ||  |||||||| |||||||||| |||| ||||| | ||||||||||||||||||    
T  18472643 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttagacaccacagagaattataagtttaacccgccactaaggca 18472739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 16075193 - 16075095
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacag-aatataattataacccgccactaaggcaat 108  Q
    ||||||||||| ||||||||||||||||||||||| |  |||||  || ||||| || ||||||| || ||||| ||  |||||||||| |||||||||    
T  16075193 cacagatgcatttgccatgcatgatcatgaaaatgcatcctaaatcccgccactcaggcaccacaaagtaatatgatattaacccgccattaaggcaat 16075095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 25921939 - 25921843
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacagaa-tataattataacccgccactaaggca 106  Q
    |||||||||||||| |||| ||||||||||||||||| || |||  ||  |||| || ||||||| |||| ||||| | |||||| |||||||||||    
T  25921939 cacagatgcatatgtcatgtatgatcatgaaaatgtaaacaaaatcccgtcacttaggcaccacaaagaattataagtttaacccaccactaaggca 25921843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 6836340 - 6836294
Alignment:
Q  60 ccactaagacaccacacagaatataattataacccgccactaaggca 106  Q
    |||||||| ||||||||||||||||||  |||||||||||| |||||    
T  6836340 ccactaaggcaccacacagaatataatagtaacccgccacttaggca 6836294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 6836427 - 6836394
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaat 44  Q
    ||||||||||||||||||||||||||| ||||||    
T  6836427 cacagatgcatatgccatgcatgatcaggaaaat 6836394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 40729182 - 40729370
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacagaatataattataacccgccactaaggcaatta 110  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| || |||||||| ||||||||||||||||||||||||| ||||||||| ||||||    
T  40729182 cacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacccgccactaaggcaccacacagaatataattataacctgccactaagacaatta 40729281  T
Q  111 cagtcaagtattaatgcatcatcaagcacacaaaccaaaagtcaatcatttcataaactcacattttcatctttctcttctttaattcat 200  Q
    ||||||| |||||| |||||||||| ||||| ||||||||||| | ||||||| ||| |||||| ||||||||||| || ||||||||||    
T  40729282 cagtcaaatattaacgcatcatcaaacacac-aaccaaaagtccaccatttcacaaattcacatgttcatctttctattatttaattcat 40729370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 89 - 228
Target Start/End: Complemental strand, 40447822 - 40447683
Alignment:
Q  89 taacccgccactaaggcaattacagtcaagtattaatgcatcatcaagcacacaaaccaaaagtcaatcatttcataaactcacattttcatctttctct 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||    
T  40447822 taacccgccactaaggcaattacagtcaagtattaatgcatcatcaagtacacaaaccaaaagtcaatcatttcacaaactcacattatcatctttttct 40447723  T
Q  189 tctttaattcatcnnnnnnntgtaacatttcttttccaac 228  Q
    ||||||| |||||       ||||||||| ||||||||||    
T  40447722 tctttaaatcatcaagaaaatgtaacattacttttccaac 40447683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 89 - 201
Target Start/End: Original strand, 36732025 - 36732137
Alignment:
Q  89 taacccgccactaaggcaattacagtcaagtattaatgcatcatcaagcacacaaaccaaaagtcaatcatttcataaactcacattttcatctttctct 188  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36732025 taacccgcccctaaggcaattacaatcaagtattaatgcatcatcacgcacacaaaccaaaagtcaatcatttcacaaactcacattttcatctttctct 36732124  T
Q  189 tctttaattcatc 201  Q
    || ||||||||||    
T  36732125 tccttaattcatc 36732137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 18292449 - 18292544
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacagaatataattataacccgccactaaggca 106  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| || |||||||| ||||||||| ||||||||||||||||||||||||||||    
T  18292449 cacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacccgccactaaggcaccacacaaaatataattataacccgccactaaggca 18292544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 34397574 - 34397667
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacagaatataattataacccgccactaaggca 106  Q
    ||||||||||||| |||||||||||||||||  || ||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||    
T  34397574 cacagatgcatataccatgcatgatcatgaa--tgcagactaaaacccgccactaaggcaccacacagaatataattataacccgccactaaggca 34397667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 40447932 - 40447845
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacagaatataattataacccgcca 98  Q
    |||||||||||||| |||||||||||||||||||| | ||||||| || |||||||| ||||||||| ||||||||||||||||||||    
T  40447932 cacagatgcatatgacatgcatgatcatgaaaatgcaaactaaaacccgccactaaggcaccacacaaaatataattataacccgcca 40447845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 18292605 - 18292674
Alignment:
Q  119 tattaatgcatcatcaagcacacaaaccaaaagtcaatcatttcataaactcacattttcatctttctctt 189  Q
    ||||||||||||||||| ||||||| ||||  ||||||||||||| |||||||||||||||||||||||||    
T  18292605 tattaatgcatcatcaaacacacaa-ccaaccgtcaatcatttcacaaactcacattttcatctttctctt 18292674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 41340008 - 41340071
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccac 74  Q
    ||||| ||||||||||||||||| ||||||||||| ||||||||| || |||||||| ||||||    
T  41340008 cacaggtgcatatgccatgcatggtcatgaaaatgaagactaaaacccgccactaaggcaccac 41340071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 44788978 - 44788932
Alignment:
Q  60 ccactaagacaccacacagaatataattataacccgccactaaggca 106  Q
    |||||||| ||||||||||||||||||| |||||| |||||||||||    
T  44788978 ccactaaggcaccacacagaatataattgtaaccctccactaaggca 44788932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 28266870 - 28266910
Alignment:
Q  14 agatgcatatgccatgcatgatcatgaaaatgtagactaaa 54  Q
    ||||||||||||||||||||||||| |||||| ||||||||    
T  28266870 agatgcatatgccatgcatgatcattaaaatgaagactaaa 28266910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 12774147 - 12774181
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatg 45  Q
    ||||||||||||||| |||||||||||||||||||    
T  12774147 cacagatgcatatgcgatgcatgatcatgaaaatg 12774181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 35670507 - 35670541
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatg 45  Q
    ||||||||||||||| |||||||||||||||||||    
T  35670507 cacagatgcatatgctatgcatgatcatgaaaatg 35670541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 44789035 - 44789002
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaat 44  Q
    |||||||||||||||| |||||||||||||||||    
T  44789035 cacagatgcatatgccttgcatgatcatgaaaat 44789002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 11 - 201
Target Start/End: Complemental strand, 637 - 444
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacagaatataattataacccgccactaaggcaatta 110  Q
    |||| ||||||||||| | |||||||||||||||| |||||||||  | |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  637 cacaaatgcatatgcctttcatgatcatgaaaatgcagactaaaactcgccactaaggcaccacacagaatataattataacccgccactaaggcaatta 538  T
Q  111 cagtcaagtattaatgcatcatc-aagcacacaaaccaaaagtcaatcatttcataaactcacattttcatctttctc--ttctttaattcatc 201  Q
    ||||||| ||||||  ||||||| || ||||| ||||||||||  ||||||||| ||||||||||||||| |||||||  ||||||||||||||    
T  537 cagtcaaatattaacacatcatcaaaacacaccaaccaaaagttcatcatttcacaaactcacattttcaactttctcttttctttaattcatc 444  T

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Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 229 - 334
Target Start/End: Original strand, 41781461 - 41781566
Alignment:
Q  229 tcaggtttaatcaaatcgattcggtacatatgaagctccattttcaggtaattattgtattccattcccacatttggagaaatcacaaatgctacgtgat 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41781461 tcaggtttaatcaaatcgattcggtacatatgaagctccattttcaggtaattattgtattccattcacacatttggagaaatcacaaatgctacgtgat 41781560  T
Q  329 ctatta 334  Q
    ||||||    
T  41781561 ctatta 41781566  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 44436573 - 44436478
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacagaatataattataacccgccactaaggca 106  Q
    ||||||||||||||||| ||||||||||||||||  ||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  44436573 cacagatgcatatgccaagcatgatcatgaaaatagagactaaaacccaccactaaggcaccacacagaatataattataacccgcaactaaggca 44436478  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 41958177 - 41958233
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaag 67  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||    
T  41958177 cacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacccatcactaag 41958233  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 44436486 - 44436442
Alignment:
Q  62 actaagacaccacacagaatataattataacccgccactaaggca 106  Q
    |||||| |||||||||||||||||||||||||||| |||||||||    
T  44436486 actaaggcaccacacagaatataattataacccgcaactaaggca 44436442  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 22635738 - 22635772
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatg 45  Q
    |||||||||||||||||||||||||||||||||||    
T  22635738 cacagatgcatatgccatgcatgatcatgaaaatg 22635772  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 22816030 - 22816064
Alignment:
Q  10 gcacagatgcatatgccatgcatgatcatgaaaat 44  Q
    |||||||||||||||||||||||||||||||||||    
T  22816030 gcacagatgcatatgccatgcatgatcatgaaaat 22816064  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 44436450 - 44436409
Alignment:
Q  62 actaagacaccacacagaatataattataacccgccactaag 103  Q
    |||||| |||||||||||||||||||||||||||| ||||||    
T  44436450 actaaggcaccacacagaatataattataacccgcaactaag 44436409  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 44436389 - 44436323
Alignment:
Q  119 tattaatgcatcatcaagcacacaaaccaaaagtcaatcatttcataaactcacattttcatctttct 186  Q
    |||||| |||||||||| ||||||  | ||||||||||||||||| || ||||| |||||||||||||    
T  44436389 tattaacgcatcatcaaacacacaggc-aaaagtcaatcatttcacaatctcacgttttcatctttct 44436323  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 3189211 - 3189248
Alignment:
Q  69 caccacacagaatataattataacccgccactaaggca 106  Q
    |||||||||||||||||||  |||||||||||||||||    
T  3189211 caccacacagaatataattgcaacccgccactaaggca 3189248  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 40841232 - 40841276
Alignment:
Q  11 cacagatgcatatgcca-tgcatgatcatgaaaatgtagactaaa 54  Q
    ||||||||||||||| | |||||||||||||||||| ||||||||    
T  40841232 cacagatgcatatgctaatgcatgatcatgaaaatgaagactaaa 40841276  T

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Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 7336449 - 7336546
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacagaatataattataacccgccactaaggcaat 108  Q
    ||||||||||||||||||||||||||||||||||| | ||||||| || |||||||| ||||||||| |||||||||||||||| ||||| |||||||    
T  7336449 cacagatgcatatgccatgcatgatcatgaaaatgcaaactaaaacccgccactaaggcaccacacaaaatataattataacccaccacttaggcaat 7336546  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 5004475 - 5004531
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaag 67  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||    
T  5004475 cacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacccgccactaag 5004531  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 16975771 - 16975727
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaa 55  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||    
T  16975771 cacagatgcatatgccatggatgatcatgaaaatgcagactaaaa 16975727  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 8731240 - 8731160
Alignment:
Q  27 atgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacag-aatataattataacccgccactaaggca 106  Q
    ||||||||||||||||||| |||||||| ||||||||| | ||| |||| || ||||| ||  ||||||||| ||||||||    
T  8731240 atgcatgatcatgaaaatgaagactaaattccaccacttacacatcacaaagcaatatgatactaacccgcccctaaggca 8731160  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 9083127 - 9083047
Alignment:
Q  27 atgcatgatcatgaaaatgtagactaaaatccaccactaagacaccacacag-aatataattataacccgccactaaggca 106  Q
    ||||||||||||||||||| |||||||| ||||||||| | ||| |||| || ||||| ||  ||||||||| ||||||||    
T  9083127 atgcatgatcatgaaaatgaagactaaattccaccacttacacatcacaaagcaatatgatactaacccgcccctaaggca 9083047  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 9104632 - 9104588
Alignment:
Q  11 cacagatgcatatgcca-tgcatgatcatgaaaatgtagactaaa 54  Q
    ||||||||||||||| | |||||||||||||||||| ||||||||    
T  9104632 cacagatgcatatgctaatgcatgatcatgaaaatgaagactaaa 9104588  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 17542468 - 17542508
Alignment:
Q  60 ccactaagacaccacacagaatataattataacccgccact 100  Q
    |||||||| ||||||||||||||||||  ||||||||||||    
T  17542468 ccactaaggcaccacacagaatataatagtaacccgccact 17542508  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 46404356 - 46404412
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaag 67  Q
    |||||||||||||||||||||  | |||||||||| | ||||||| || ||||||||    
T  46404356 cacagatgcatatgccatgcacaaacatgaaaatgcacactaaaacccgccactaag 46404412  T

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Target: scaffold0041 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 33190 - 33259
Alignment:
Q  131 atcaagcacacaaaccaaaagtcaatcatttcataaactcacattttcatctttctcttctttaattcat 200  Q
    |||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33190 atcaagtacacgaaccaaaagtcaatcatttcacaaactcacattttcatctttctcttctttaattcat 33259  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 10751315 - 10751371
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaag 67  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||    
T  10751315 cacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacccgccactaag 10751371  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 23260369 - 23260413
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaa 55  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  23260369 cacagatgcatatgccatgcatgatcatgaaaatgcagactaaaa 23260413  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 34636638 - 34636582
Alignment:
Q  11 cacagatgcatatgccatgcatgatcatgaaaatgtagactaaaatccaccactaag 67  Q
    ||||||||||||||||||||| || |||||||||| | ||||||| || ||||||||    
T  34636638 cacagatgcatatgccatgcacgaacatgaaaatgcacactaaaacccgccactaag 34636582  T

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