View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8094_low_9 (Length: 331)
Name: NF8094_low_9
Description: NF8094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8094_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 169 - 326
Target Start/End: Complemental strand, 33724219 - 33724063
Alignment:
| Q |
169 |
attaacatgacattatcattatattaacttgaacaagaagaaattaaagataattatgatgatcgatggttgcatacataaaatttaaatcgtgtgtgtg |
268 |
Q |
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| T |
33724219 |
attaacatgacattatcattatattaacttgaacaagaagaaattaaagataattatgatgatcgatggttgcatacataaaatttaaatcgtgtgtgtg |
33724120 |
T |
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| Q |
269 |
gttacactgaatttatgttagataagtccccttgatttttgtatattttcatctcact |
326 |
Q |
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| T |
33724119 |
gttacactgaatttatgttagataagtccccttgattttt-tatattttcatatcact |
33724063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 33724432 - 33724291
Alignment:
| Q |
20 |
tttatgaatttgtacatttaccaaaagcttagtcaattttataataggtagctagcattttccatggattctcacataaagtttatccctcttgattagt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33724432 |
tttatgaatttgtacatttaccaaaagcttagtcaattttataataggtagctagcattttccatggattctcacataaagtttattcctcttgattagt |
33724333 |
T |
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| Q |
120 |
attgactattgacacactacattgcttgcaatctcatacatttgtagat |
168 |
Q |
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| T |
33724332 |
at-------tgacacactacattgcttgcaatctcatacatttgtagat |
33724291 |
T |
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