View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8095_low_1 (Length: 356)

Name: NF8095_low_1
Description: NF8095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8095_low_1
NF8095_low_1
[»] chr1 (3 HSPs)
chr1 (1-340)||(9797522-9797861)
chr1 (183-325)||(13429368-13429510)
chr1 (183-277)||(49641673-49641767)
[»] chr4 (3 HSPs)
chr4 (179-274)||(20242801-20242896)
chr4 (180-282)||(13987397-13987499)
chr4 (183-277)||(18253392-18253486)
[»] scaffold0013 (1 HSPs)
scaffold0013 (180-282)||(249535-249637)
[»] chr3 (3 HSPs)
chr3 (180-282)||(31195774-31195876)
chr3 (180-282)||(52772437-52772539)
chr3 (183-277)||(53977532-53977626)
[»] chr6 (1 HSPs)
chr6 (186-282)||(26132850-26132946)
[»] chr7 (1 HSPs)
chr7 (189-282)||(16255927-16256020)
[»] chr2 (1 HSPs)
chr2 (170-273)||(20043456-20043559)
[»] scaffold0014 (1 HSPs)
scaffold0014 (180-282)||(96418-96520)
[»] scaffold0164 (2 HSPs)
scaffold0164 (183-277)||(17366-17460)
scaffold0164 (183-277)||(27746-27840)
[»] chr8 (2 HSPs)
chr8 (179-277)||(28303451-28303549)
chr8 (183-277)||(15192514-15192608)


Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 9797522 - 9797861
Alignment:
Q  1 atatatcacaaacaaaatctttatatatggttacataaggaaaactatgatgtaaacctagcaatctatgattagaaagatggcctagcctaaaatgccg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9797522 atatatcacaaacaaaatctttatatatggttacataaggaaaactatgatgtaaacctagcaatctatgattagaaagatggcctagcctaaaatgccg 9797621  T
Q  101 aagggcttcttctggtatgatagtagattgagattgaatcaaagatgaggctatagtggcttgaggtctttgtgtggaaaggaagtacaatccctcaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9797622 aagggcttcttctggtatgatagtagattgagattgaatcaaagatgaggctatagtggcttgaggtctttgtgtggaaaggaagtacaatccctcaatt 9797721  T
Q  201 aaatcagccgaactaatcatcttcaagctcctcttttcctgaattaaacatttatcattataaaaagttactatgcattcattgtctaaacaaagtttgg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9797722 aaatcagccgaactaatcatcttcaagctcctcttttcctgaattaaacatttatcattataaaaagttactatgcattcattgtctaaacaaagtttgg 9797821  T
Q  301 gcacaaacaataaattcaaattgaaatcaggcacaaaaag 340  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9797822 gcacaaacaataaattcaaattgaaatcaggcacaaaaag 9797861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 183 - 325
Target Start/End: Original strand, 13429368 - 13429510
Alignment:
Q  183 aagtacaatccctcaattaaatcagccgaactaatcatcttcaagctcctcttttcctgaattaaacatttatcattataaaaagttactatgcattcat 282  Q
    |||||||||||||| || ||||||||| ||| ||||||||||||  ||||  ||||||  ||||||||||||||||| | |||||  |||||||| ||||    
T  13429368 aagtacaatccctctatcaaatcagccaaaccaatcatcttcaaattccttctttcctatattaaacatttatcattgtcaaaagacactatgcaatcat 13429467  T
Q  283 tgtctaaacaaagtttgggcacaaacaataaattcaaattgaa 325  Q
    | || | ||| ||||| |||||| | | ||||||||| |||||    
T  13429468 tatcaacacatagtttaggcacatatagtaaattcaatttgaa 13429510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 277
Target Start/End: Original strand, 49641673 - 49641767
Alignment:
Q  183 aagtacaatccctcaattaaatcagccgaactaatcatcttcaagctcctcttttcctgaattaaacatttatcattataaaaagttactatgca 277  Q
    ||||||||||| |||||||| ||| || ||| | ||||||||||  | ||||| ||||| || |||||||||||||||| |||||| ||||||||    
T  49641673 aagtacaatccttcaattaattcacccaaaccagtcatcttcaaattgctcttgtcctgtataaaacatttatcattatcaaaagtgactatgca 49641767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 179 - 274
Target Start/End: Original strand, 20242801 - 20242896
Alignment:
Q  179 aaggaagtacaatccctcaattaaatcagccgaactaatcatcttcaagctcctcttttcctgaattaaacatttatcattataaaaagttactat 274  Q
    ||||||||||||||||||||| ||||||||| ||| |||||||||||||||| ||||||| ||||| |||||||||||||||| ||| ||||||||    
T  20242801 aaggaagtacaatccctcaatcaaatcagccaaaccaatcatcttcaagctcgtcttttcttgaatcaaacatttatcattattaaaggttactat 20242896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 282
Target Start/End: Complemental strand, 13987499 - 13987397
Alignment:
Q  180 aggaagtacaatccctcaattaaatcagccgaactaatcatcttcaagctcctcttttcctgaattaaacatttatcattataaaaagttactatgcatt 279  Q
    ||||| ||||||||||| || ||||||| |  || | ||||||||| | ||||| |||| || ||||||||||||||||||| ||||||||||||||| |    
T  13987499 aggaaatacaatccctctatcaaatcagtcagaccagtcatcttcatgttcctcctttcttgtattaaacatttatcattatcaaaagttactatgcaat 13987400  T
Q  280 cat 282  Q
    |||    
T  13987399 cat 13987397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 277
Target Start/End: Complemental strand, 18253486 - 18253392
Alignment:
Q  183 aagtacaatccctcaattaaatcagccgaactaatcatcttcaagctcctcttttcctgaattaaacatttatcattataaaaagttactatgca 277  Q
    ||||||||||| ||||| || ||| || ||| | ||||||||||  | ||||| ||||| || |||||||||||||||| |||||| ||||||||    
T  18253486 aagtacaatccttcaatcaattcacccaaaccagtcatcttcaaattgctcttgtcctgtataaaacatttatcattatcaaaagtgactatgca 18253392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 180 - 282
Target Start/End: Original strand, 249535 - 249637
Alignment:
Q  180 aggaagtacaatccctcaattaaatcagccgaactaatcatcttcaagctcctcttttcctgaattaaacatttatcattataaaaagttactatgcatt 279  Q
    ||||| ||||||||||| || ||||||||| ||| ||||||||||||| ||||| ||||||| ||||||||||||||||||| ||||||||||||||| |    
T  249535 aggaaatacaatccctctatcaaatcagccaaaccaatcatcttcaagttcctcctttcctgtattaaacatttatcattatcaaaagttactatgcaat 249634  T
Q  280 cat 282  Q
    |||    
T  249635 cat 249637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 180 - 282
Target Start/End: Original strand, 31195774 - 31195876
Alignment:
Q  180 aggaagtacaatccctcaattaaatcagccgaactaatcatcttcaagctcctcttttcctgaattaaacatttatcattataaaaagttactatgcatt 279  Q
    ||||| ||||||||||| || ||||||||| ||| | ||||||||||| ||||| ||||||| ||||||||||||||||||| ||||||||||||||| |    
T  31195774 aggaaatacaatccctctatcaaatcagccaaaccagtcatcttcaagttcctcctttcctgtattaaacatttatcattatcaaaagttactatgcaat 31195873  T
Q  280 cat 282  Q
    |||    
T  31195874 cat 31195876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 180 - 282
Target Start/End: Complemental strand, 52772539 - 52772437
Alignment:
Q  180 aggaagtacaatccctcaattaaatcagccgaactaatcatcttcaagctcctcttttcctgaattaaacatttatcattataaaaagttactatgcatt 279  Q
    ||||| ||||||||||| || ||||||||| ||| | ||||||||||| ||||| ||||||| ||||||||||||||||||| ||||||||||||||| |    
T  52772539 aggaaatacaatccctctatcaaatcagccaaaccagtcatcttcaagttcctcctttcctgtattaaacatttatcattatcaaaagttactatgcaat 52772440  T
Q  280 cat 282  Q
    |||    
T  52772439 cat 52772437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 277
Target Start/End: Complemental strand, 53977626 - 53977532
Alignment:
Q  183 aagtacaatccctcaattaaatcagccgaactaatcatcttcaagctcctcttttcctgaattaaacatttatcattataaaaagttactatgca 277  Q
    ||||||||||| |||||||| ||| || ||| | ||||||||||  | ||||| ||||| || |||||||||||||||| |||||| ||||||||    
T  53977626 aagtacaatccttcaattaattcacccaaaccagtcatcttcaaattgctcttgtcctgtataaaacatttatcattatcaaaagtgactatgca 53977532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 186 - 282
Target Start/End: Complemental strand, 26132946 - 26132850
Alignment:
Q  186 tacaatccctcaattaaatcagccgaactaatcatcttcaagctcctcttttcctgaattaaacatttatcattataaaaagttactatgcattcat 282  Q
    ||||||||||| || ||||||||| ||| | ||||||||||| ||||| ||||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  26132946 tacaatccctctatcaaatcagccaaaccagtcatcttcaagttcctcctttcctgtattaaacatttatcattatcaaaagttactatgcaatcat 26132850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 189 - 282
Target Start/End: Complemental strand, 16256020 - 16255927
Alignment:
Q  189 aatccctcaattaaatcagccgaactaatcatcttcaagctcctcttttcctgaattaaacatttatcattataaaaagttactatgcattcat 282  Q
    |||||||| || ||||||||| ||| | ||||||||||| ||||| ||||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  16256020 aatccctctatcaaatcagccaaaccagtcatcttcaagttcctcctttcctgtattaaacatttatcattatcaaaagttactatgcaatcat 16255927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 273
Target Start/End: Original strand, 20043456 - 20043559
Alignment:
Q  170 ttgtgtggaaaggaagtacaatccctcaattaaatcagccgaactaatcatcttcaagctcctcttttcctgaattaaacatttatcattataaaaagtt 269  Q
    |||||||| |||||| |||| ||| |||| ||| ||| |||||| ||||||||||||||||||||||||||| || | ||||||| ||| || |||||||    
T  20043456 ttgtgtggtaaggaaatacagtccttcaaataattcacccgaaccaatcatcttcaagctcctcttttcctgtataacacatttaccatcatcaaaagtt 20043555  T
Q  270 acta 273  Q
    ||||    
T  20043556 acta 20043559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 282
Target Start/End: Original strand, 96418 - 96520
Alignment:
Q  180 aggaagtacaatccctcaattaaatcagccgaactaatcatcttcaagctcctcttttcctgaattaaacatttatcattataaaaagttactatgcatt 279  Q
    ||||| ||||||||||| || ||||||| |  || | ||||||||| | ||||| |||| || ||||||||||||||||||| ||||||||||||||| |    
T  96418 aggaaatacaatccctctatcaaatcagtcagaccagtcatcttcatgttcctcctttcttgtattaaacatttatcattatcaaaagttactatgcaat 96517  T
Q  280 cat 282  Q
    |||    
T  96518 cat 96520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 277
Target Start/End: Original strand, 17366 - 17460
Alignment:
Q  183 aagtacaatccctcaattaaatcagccgaactaatcatcttcaagctcctcttttcctgaattaaacatttatcattataaaaagttactatgca 277  Q
    ||||||||||| |||||||| ||| || ||| | ||||||||||  | ||||| ||||| || |||||||||||||||| |||||| ||||||||    
T  17366 aagtacaatccttcaattaattcacccaaaccagtcatcttcaaattgctcttgtcctgtataaaacatttatcattatcaaaagtgactatgca 17460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 277
Target Start/End: Original strand, 27746 - 27840
Alignment:
Q  183 aagtacaatccctcaattaaatcagccgaactaatcatcttcaagctcctcttttcctgaattaaacatttatcattataaaaagttactatgca 277  Q
    ||||||||||| |||||||| ||| || ||| | ||||||||||  | ||||| ||||| || |||||||||||||||| |||||| ||||||||    
T  27746 aagtacaatccttcaattaattcacccaaaccagtcatcttcaaattgctcttgtcctgtataaaacatttatcattatcaaaagtgactatgca 27840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 28303549 - 28303451
Alignment:
Q  179 aaggaagtacaatccctcaattaaatcagccgaactaatcatcttcaagctcctcttttcctgaattaaacatttatcattataaaaagttactatgca 277  Q
    |||||||||||||  |||||| ||||||| ||||| ||| || |||||||||| | |||| ||||| || ||||||||||||| |||| |||| |||||    
T  28303549 aaggaagtacaatttctcaatcaaatcagtcgaaccaatgatgttcaagctccacgtttcatgaatcaagcatttatcattatcaaaatttacaatgca 28303451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 277
Target Start/End: Complemental strand, 15192608 - 15192514
Alignment:
Q  183 aagtacaatccctcaattaaatcagccgaactaatcatcttcaagctcctcttttcctgaattaaacatttatcattataaaaagttactatgca 277  Q
    ||||||||||| |||||||| ||| || ||| | ||||||||||  | ||||| ||||| || ||||| |||||||||| |||||| ||||||||    
T  15192608 aagtacaatccttcaattaattcacccaaaccagtcatcttcaaattgctcttgtcctgtataaaacacttatcattatcaaaagtgactatgca 15192514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University