View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8095_low_11 (Length: 246)
Name: NF8095_low_11
Description: NF8095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8095_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 22369583 - 22369360
Alignment:
| Q |
17 |
aacaattcacttcactttcatttccacaagtagaagaaaacaatccgttnnnnnnnnnnnnnnnnnnggaaaataatgtatatatgtatattcaataann |
116 |
Q |
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| T |
22369583 |
aacaattcacttcactttcatttccacaagtagaagaaaacaatccgttaaaaaaaaaaaaaa----ggaaaataatgtatatatgtatattcaataatt |
22369488 |
T |
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| Q |
117 |
nnnnnnccctccctatgaattaatactcatcgtgtttcatttgtgattatagtatgtagcataggnnnnnnnnagatatccttcatatcattttcaatat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22369487 |
ttttt-ccctccctatgaattaatactcatcgtgtttcatttgtgattatagtatgtagcatagg-tttttttagatatccttcatatcattttcaatat |
22369390 |
T |
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| Q |
217 |
agtcaaaggtatcggttagtactccatttt |
246 |
Q |
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|||||||| ||||||||||||||||||||| |
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| T |
22369389 |
agtcaaagatatcggttagtactccatttt |
22369360 |
T |
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