View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8095_low_12 (Length: 241)
Name: NF8095_low_12
Description: NF8095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8095_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 54424748 - 54424536
Alignment:
| Q |
18 |
atatctgaccacactcctcttctcctacagcttttaattctataccgtggaggcaacctcaccgtagttttcggtttaataattcttggctattagaaac |
117 |
Q |
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| T |
54424748 |
atatctgaccacactcctcttctcctacagctt--aattctataccgtggaggcaaactcaccgtagttttcagtttaataattcttggctattaaaaac |
54424651 |
T |
|
| Q |
118 |
agaactcaatcaatttgtgaagagcaactgggcctattatcctccgtcaaatattctcaccaaactcagtcactatattgaagacatttcctcttggagc |
217 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
54424650 |
agaacccaatcaattggtgaagagcaactgggcctattatcctccgtcaaatattctcaccaaactcaatcactgtattgaagacatttcctcttggagc |
54424551 |
T |
|
| Q |
218 |
agaaatatcacgcca |
232 |
Q |
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||||||||||||||| |
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| T |
54424550 |
agaaatatcacgcca |
54424536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 20120094 - 20120299
Alignment:
| Q |
18 |
atatctgaccacactcctcttctcctacagcttttaattctataccgtggaggcaacctcaccgtagttttcggtttaataattcttggctattagaaac |
117 |
Q |
| |
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|||||||||||||| ||||| || || |||||| || ||||||| ||||| |||||| |||| | ||||||||| | ||||||||||| |||||| | |
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| T |
20120094 |
atatctgaccacacccctctgcttctgcagcttg--atcctataccttggagacaaccttaccgcaactttcggtttgacaattcttggcttttagaacc |
20120191 |
T |
|
| Q |
118 |
agaactcaatcaatttgtgaagagcaactgggcctattatcctccgtcaaatattctcaccaaactcagtcactatattgaagacatttcctcttggagc |
217 |
Q |
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|||||||||||||| |||||||||||||||||| |||| ||||| || |||||| ||| |||||||| ||||| | | | ||| ||||| ||||||||| |
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| T |
20120192 |
ggaactcaatcaattggtgaagagcaactgggcccattaccctccatctaatattatcaacaaactcaatcactgtgtcgcagatatttcatcttggagc |
20120291 |
T |
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| Q |
218 |
agaaatat |
225 |
Q |
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|||||||| |
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| T |
20120292 |
agaaatat |
20120299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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