View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8095_low_13 (Length: 240)
Name: NF8095_low_13
Description: NF8095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8095_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 36206616 - 36206493
Alignment:
| Q |
1 |
ccaagttatccggcacaactcttccaattcatagcttctaaaactccctctcacaacctcgcttgggatgttgccaccggaagtggacaagctgccaaat |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
36206616 |
ccaagttatccaccacaactcttccaattcatagcttctaaaactccctctcacaacctcgtttgggacgttgccaccggaagtggacaagctcccaaat |
36206517 |
T |
|
| Q |
101 |
ctgtgcgtttctcttgtcaaagaa |
124 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
36206516 |
ctgtgcgtttctcttgtcaaagaa |
36206493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 35399022 - 35399125
Alignment:
| Q |
1 |
ccaagttatccggcacaactcttccaattcatagcttctaaaactccctctcacaacctcgcttgggatgttgccaccggaagtggacaagctgccaaat |
100 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| || |||||||| ||||| ||||||| |
|
|
| T |
35399022 |
ccaagttatccaccacaactctttcaattcatagcttctaaaactccctctcacaaccttgtttgggatgttgctactggaagtggccaagccgccaaat |
35399121 |
T |
|
| Q |
101 |
ctgt |
104 |
Q |
| |
|
|||| |
|
|
| T |
35399122 |
ctgt |
35399125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 35401750 - 35401853
Alignment:
| Q |
1 |
ccaagttatccggcacaactcttccaattcatagcttctaaaactccctctcacaacctcgcttgggatgttgccaccggaagtggacaagctgccaaat |
100 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| || |||||||| ||||| ||||||| |
|
|
| T |
35401750 |
ccaagttatccaccacaactctttcaattcatagcttctaaaactccctctcacaaccttgtttgggatgttgctactggaagtggccaagccgccaaat |
35401849 |
T |
|
| Q |
101 |
ctgt |
104 |
Q |
| |
|
|||| |
|
|
| T |
35401850 |
ctgt |
35401853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 36210383 - 36210276
Alignment:
| Q |
1 |
ccaagttatccggcacaactcttccaattcatagcttctaaaactccctctcacaacctcgcttgggatgttgccaccggaagtggacaagctgccaaat |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||| || ||||| |||| || ||||||||||||| |
|
|
| T |
36210383 |
ccaagttatccaccacaactcttccaattcatagcttctaaaactccctctcacgaccttgcttgggacgtggccacaggaaccggccaagctgccaaat |
36210284 |
T |
|
| Q |
101 |
ctgtgcgt |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
36210283 |
ctgtgcgt |
36210276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University