View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8095_low_14 (Length: 240)
Name: NF8095_low_14
Description: NF8095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8095_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 3348552 - 3348765
Alignment:
| Q |
17 |
accttcaaggatacagtgactatagtataattctaattttaaaacnnnnnnnaaaacttatatatctttttaataatnnnnnnnnnn-gtttgttannnn |
115 |
Q |
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| T |
3348552 |
accttcaaggatacagtgactatagtataattctaattttaaaactttttttaaaacttatatatctttttaataataaaaaaaaaaagtttgttatttt |
3348651 |
T |
|
| Q |
116 |
nnnaagagatatgcatannnnnnnaatgtgaaattgtgtccttgttttctttctctctcaccattcctagggaaaagattctctcccattaaatctttca |
215 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3348652 |
tttaagagatatgcatatttttttaatgtgaaattgtgtccttgttttctttctctctcaccattcctagggaaaagattctctcccattaaatctttca |
3348751 |
T |
|
| Q |
216 |
gctgttaaaccatc |
229 |
Q |
| |
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|||||||||||||| |
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|
| T |
3348752 |
gctgttaaaccatc |
3348765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 3334965 - 3335053
Alignment:
| Q |
140 |
aatgtgaaattgtgtccttgttttctttctctctcaccattcctagggaaaagattctctcccattaaatctttcagctgttaaaccatc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3334965 |
aatgtgaaattgtgtccttgttttctttctctctcaccattctta-ggaagagattctctcccattaaatctttcagctgttaaaccatc |
3335053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 3334860 - 3334903
Alignment:
| Q |
17 |
accttcaaggatacagtgactatagtataattctaattttaaaac |
61 |
Q |
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||||||||| ||| ||| ||||||||||||||||||||||||||| |
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|
| T |
3334860 |
accttcaagaatatagt-actatagtataattctaattttaaaac |
3334903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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