View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8095_low_2 (Length: 329)
Name: NF8095_low_2
Description: NF8095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8095_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 307
Target Start/End: Complemental strand, 2246661 - 2246361
Alignment:
| Q |
8 |
gggtagataatactaaaggtggtcaacgaggattagttttagtgaagtaaacctggataaaaaatgtttaagtagatcatattttatttctttcaaaata |
107 |
Q |
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| T |
2246661 |
gggtaaatcatactgaaggtggtcaacgaggattagttttagtgaagtaaacctggttaaaaaatgtttaagtagatcatattttatttctttcaaaata |
2246562 |
T |
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| Q |
108 |
catatcataagagatatttnnnnnnnnnnnnnnnn-gtacaagctttttcatgtgtgtaacacttcatagtttctgatgcaggaagtaattttctcaatg |
206 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
2246561 |
catatcataagagatatttaaaaaaaaaaaaaaaaagtacaagctttttcatgtgtgtaacacttcatagttttttatgcaggaagtaattttctcaatg |
2246462 |
T |
|
| Q |
207 |
tttcactaccaagatgttaccctatgaaggaaagacatgtgaaagttaggcatgtagtctatgctgctgctgcggttgcaacaagtcctactgaggaaat |
306 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2246461 |
tttcactgccaagatgttaccctatgaaggaaagacatgtgaaagttaggcatgtagtcaatgctgctgctgcggttgcaacaagtcctactgaggaaat |
2246362 |
T |
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| Q |
307 |
t |
307 |
Q |
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| |
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| T |
2246361 |
t |
2246361 |
T |
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