View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8095_low_3 (Length: 310)
Name: NF8095_low_3
Description: NF8095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8095_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 32831031 - 32830746
Alignment:
| Q |
19 |
gtgtgaatggaatggttcaattattaagggatgaaaagtttaattaaaaaagggtattttggtnnnnnnnnntcctttctggttatgattttagtctact |
118 |
Q |
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| T |
32831031 |
gtgtgaatggaatggttcaattattaagggatgaaaagtttaattaaaaaagggtattttggtaaaaaaaa-tcctttcttgttatgattttagtctact |
32830933 |
T |
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| Q |
119 |
taacttatctactatnnnnnnnn----tccttt-atttgtgattgttgcattagatttaattgtatatttgctatttggatttatgcagggtcaaaaaga |
213 |
Q |
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| T |
32830932 |
taacttatctactatataagaaaattttcattttatttgtgattgttgcattagatttaattgtatatttgctatttggatttatgcagggtcaaaaaga |
32830833 |
T |
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| Q |
214 |
aggaatgcattctgttatacatgttcaaaaactacttgatcaattttcatgtggaaatgaccatgccttgaaggttctcccttcatt |
300 |
Q |
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| T |
32830832 |
aggaatgcattctgttatacatgttcaaaaactacttgatcaattttcatgtggaaatgaccatgccttgaaggttctcccttcatt |
32830746 |
T |
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