View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8095_low_4 (Length: 280)

Name: NF8095_low_4
Description: NF8095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8095_low_4
NF8095_low_4
[»] chr2 (11 HSPs)
chr2 (1-169)||(821047-821215)
chr2 (32-168)||(410184-410320)
chr2 (55-157)||(982091-982193)
chr2 (72-168)||(965465-965561)
chr2 (67-163)||(974016-974112)
chr2 (32-134)||(1403192-1403294)
chr2 (32-140)||(1399487-1399595)
chr2 (46-150)||(989773-989877)
chr2 (100-151)||(963578-963629)
chr2 (228-262)||(821274-821308)
chr2 (101-168)||(824884-824948)
[»] chr6 (1 HSPs)
chr6 (49-168)||(10116747-10116866)
[»] chr3 (1 HSPs)
chr3 (31-163)||(45810491-45810623)
[»] chr7 (5 HSPs)
chr7 (39-168)||(1446010-1446139)
chr7 (38-168)||(12105209-12105339)
chr7 (101-163)||(1459328-1459390)
chr7 (107-151)||(1333502-1333546)
chr7 (107-151)||(28449797-28449841)
[»] chr1 (1 HSPs)
chr1 (102-151)||(48675483-48675532)
[»] chr5 (1 HSPs)
chr5 (100-151)||(36199113-36199164)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 821047 - 821215
Alignment:
Q  1 ttttatataaactagatttatcgctattattatgactttcctacatttcataatttgacccatttggtgcacaactatgattggaatatagttgtacggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  821047 ttttatataaactagatttatcgctattattatgactttcctacatttcataatttgacccatttggtgcacaactatgattggaatatagttgtatggg 821146  T
Q  101 tgctccaccattgccctaaacttcaaaatcttgaactttatcaggtttgtttgttaagtttaagaatcc 169  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  821147 tgctccaccattgccctaagcttcaaaatcttgaactttatcaggtttgcttgttaagtttaagaatcc 821215  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 32 - 168
Target Start/End: Original strand, 410184 - 410320
Alignment:
Q  32 atgactttcctacatttcataatttgacccatttggtgcacaactatgattggaatatagttgtacgggtgctccaccattgccctaaacttcaaaatct 131  Q
    ||||||| |||||||| |||||||||| ||||||||||  |||||| ||  || ||||||||||||  |||||||||||||||||||| |||||||||||    
T  410184 atgacttccctacattccataatttgatccatttggtgatcaactacgacggggatatagttgtacaagtgctccaccattgccctaagcttcaaaatct 410283  T
Q  132 tgaactttatcaggtttgtttgttaagtttaagaatc 168  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  410284 tgaactttatcgggtttgtttgttaaatttaagaatc 410320  T

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Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 982193 - 982091
Alignment:
Q  55 ttgacccatttggtgcacaactatgattggaatatagttgtacgggtgctccaccattgccctaaacttcaaaatcttgaactttatcaggtttgtttgt 154  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||||| |||||||||||||||||||    
T  982193 ttgactcatttggtgctcaactatgattggaatatagttgtacgagtgctccaccattgctttaagcttcaaaatcttgacctttatcaggtttgtttgt 982094  T
Q  155 taa 157  Q
    |||    
T  982093 taa 982091  T

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Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 965561 - 965465
Alignment:
Q  72 caactatgattggaatatagttgtacgggtgctccaccattgccctaaacttcaaaatcttgaactttatcaggtttgtttgttaagtttaagaatc 168  Q
    ||||||||||||| |||||||||| |  |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  965561 caactatgattgggatatagttgttcaagtgctccatcattgccctaagcttcaaaatcttgaactttatcaggtttgtttgttaaatttaacaatc 965465  T

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Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 974112 - 974016
Alignment:
Q  67 gtgcacaactatgattggaatatagttgtacgggtgctccaccattgccctaaacttcaaaatcttgaactttatcaggtttgtttgttaagtttaa 163  Q
    |||| ||||||||||||| |||||||||| |  |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| |||||    
T  974112 gtgctcaactatgattgggatatagttgttcaagtgctccatcattgccctaagcttcaaaatcttgacctttatcaggtttgtttgttaaatttaa 974016  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 134
Target Start/End: Original strand, 1403192 - 1403294
Alignment:
Q  32 atgactttcctacatttcataatttgacccatttggtgcacaactatgattggaatatagttgtacgggtgctccaccattgccctaaacttcaaaatct 131  Q
    |||||||||||||||| ||||||||||| ||| |||||| ||||||| | ||  ||||| ||||||  |||||| ||||||||||||| |||||||||||    
T  1403192 atgactttcctacattccataatttgactcatctggtgctcaactataactgtgatataattgtacaagtgctctaccattgccctaagcttcaaaatct 1403291  T
Q  132 tga 134  Q
    |||    
T  1403292 tga 1403294  T

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Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 1399487 - 1399595
Alignment:
Q  32 atgactttcctacatttcataatttgacccatttggtgcacaactatgattggaatatagttgtacgggtgctccaccattgccctaaacttcaaaatct 131  Q
    |||||||| ||||||| ||||||||||| ||| |||||| |||||||   ||  ||||| ||||||  |||||||||||||||||||| |||||||||||    
T  1399487 atgacttttctacattccataatttgactcatctggtgctcaactatagctgtgatataattgtacaagtgctccaccattgccctaagcttcaaaatct 1399586  T
Q  132 tgaacttta 140  Q
    |||| ||||    
T  1399587 tgaatttta 1399595  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 989877 - 989773
Alignment:
Q  46 tttcataatttgacccatttggtgcacaactatgattggaatatagttgtacgggtgctccaccattgccctaaacttcaaaatcttgaactttatcagg 145  Q
    ||||||||||||||||| |||| || | || || ||||| || | || ||||  ||||||||||| |||||||| |||||||||||  ||||||||||||    
T  989877 tttcataatttgacccacttggagctctacaataattgggatttggtagtacaagtgctccaccactgccctaagcttcaaaatctccaactttatcagg 989778  T
Q  146 tttgt 150  Q
    |||||    
T  989777 tttgt 989773  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 963578 - 963629
Alignment:
Q  100 gtgctccaccattgccctaaacttcaaaatcttgaactttatcaggtttgtt 151  Q
    |||||| |||| |||||||||||||||||||| || ||||||||||||||||    
T  963578 gtgctctaccactgccctaaacttcaaaatctcgagctttatcaggtttgtt 963629  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 262
Target Start/End: Original strand, 821274 - 821308
Alignment:
Q  228 acagaagttaattggcaacattagaatgcactatt 262  Q
    |||||||||||||||||||||||||||||||||||    
T  821274 acagaagttaattggcaacattagaatgcactatt 821308  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 824884 - 824948
Alignment:
Q  101 tgctccaccattgccctaaacttcaaaatcttgaactttatcaggtttgtttgttaagtttaagaatc 168  Q
    |||||||||| | |||||| ||||| |||||||||||||||| |||||||   |||||||||||||||    
T  824884 tgctccaccacttccctaagcttcagaatcttgaactttatcgggtttgt---ttaagtttaagaatc 824948  T

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Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 49 - 168
Target Start/End: Complemental strand, 10116866 - 10116747
Alignment:
Q  49 cataatttgacccatttggtgcacaactatgattggaatatagttgtacgggtgctccaccattgccctaaacttcaaaatcttgaactttatcaggttt 148  Q
    ||||||||||| |||||||||| |  |||||||||| ||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10116866 cataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatcttgaactttatcaggttt 10116767  T
Q  149 gtttgttaagtttaagaatc 168  Q
    ||||||||| ||||| ||||    
T  10116766 gtttgttaaatttaacaatc 10116747  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 163
Target Start/End: Complemental strand, 45810623 - 45810491
Alignment:
Q  31 tatgactttcctacatttcataatttgacccatttggtgcacaactatgattggaatatagttgtacgggtgctccaccattgccctaaacttcaaaatc 130  Q
    |||||||||||||||||  |||||||||| |||||||||  ||||||||||||| ||||||||||||  ||||| || ||||| ||||| ||||||| ||    
T  45810623 tatgactttcctacattcaataatttgactcatttggtggtcaactatgattgggatatagttgtacaagtgcttcagcattgtcctaagcttcaaagtc 45810524  T
Q  131 ttgaactttatcaggtttgtttgttaagtttaa 163  Q
    | || |||||||||||||| ||||||| |||||    
T  45810523 tcgacctttatcaggtttgcttgttaaatttaa 45810491  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 1446139 - 1446010
Alignment:
Q  39 tcctacatttcataatttgacccatttggtgcacaactatgattggaatatagttgtacgggtgctccaccattgccctaaacttcaaaatcttgaactt 138  Q
    ||||||||| ||||||||||| |||||||||| || |||   ||||  |||||||  ||| |||||| ||| ||||||||| ||||||||| ||||| ||    
T  1446139 tcctacattccataatttgactcatttggtgctcagctacagttggggtatagttcaacgtgtgctctacctttgccctaagcttcaaaatattgaattt 1446040  T
Q  139 tatcaggtttgtttgttaagtttaagaatc 168  Q
    |||||||||||||| |||| ||||| ||||    
T  1446039 tatcaggtttgtttcttaattttaacaatc 1446010  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 38 - 168
Target Start/End: Original strand, 12105209 - 12105339
Alignment:
Q  38 ttcctacatttcataatttgacccatttggtgcacaactatgattggaatatagttgtacgggtgctccaccattgccctaaacttcaaaatcttgaact 137  Q
    |||||||||| ||||||||||| |||||||||| |  |||| ||||| ||||||||  | |  |||| |||| ||| ||||| |||||||||||||| ||    
T  12105209 ttcctacattccataatttgactcatttggtgctctgctataattgggatatagttccaagaatgctgcacctttgtcctaagcttcaaaatcttgacct 12105308  T
Q  138 ttatcaggtttgtttgttaagtttaagaatc 168  Q
    || |||||||||||| |||| ||||| ||||    
T  12105309 ttttcaggtttgtttcttaaatttaacaatc 12105339  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 1459390 - 1459328
Alignment:
Q  101 tgctccaccattgccctaaacttcaaaatcttgaactttatcaggtttgtttgttaagtttaa 163  Q
    |||||||| ||||||| || ||||||| |||||||||||||||||||||||| |||| |||||    
T  1459390 tgctccacgattgccccaagcttcaaactcttgaactttatcaggtttgtttcttaattttaa 1459328  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 1333546 - 1333502
Alignment:
Q  107 accattgccctaaacttcaaaatcttgaactttatcaggtttgtt 151  Q
    ||||||||||||| |||||||  ||||||||| ||||||||||||    
T  1333546 accattgccctaagcttcaaaggcttgaacttgatcaggtttgtt 1333502  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 28449841 - 28449797
Alignment:
Q  107 accattgccctaaacttcaaaatcttgaactttatcaggtttgtt 151  Q
    ||||||| ||||| |||||||| ||||| ||||||||||||||||    
T  28449841 accattgtcctaaccttcaaaagcttgagctttatcaggtttgtt 28449797  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 48675532 - 48675483
Alignment:
Q  102 gctccaccattgccctaaacttcaaaatcttgaactttatcaggtttgtt 151  Q
    ||||||||| |||||||||||||||||||| || ||||||||||||||||    
T  48675532 gctccaccactgccctaaacttcaaaatctcgagctttatcaggtttgtt 48675483  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 36199113 - 36199164
Alignment:
Q  100 gtgctccaccattgccctaaacttcaaaatcttgaactttatcaggtttgtt 151  Q
    ||||| ||||| |||||||||||||||| |||||||||||| ||||||||||    
T  36199113 gtgcttcaccactgccctaaacttcaaattcttgaactttaccaggtttgtt 36199164  T

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