View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8095_low_5 (Length: 279)
Name: NF8095_low_5
Description: NF8095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8095_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 33273989 - 33274249
Alignment:
| Q |
1 |
tgctcaaatctggtttgtaagcatcctcaaatagttctgtatttcgagtagcacaggtcgaaagagtgctctccttgttatcatcattgcttgtaattgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33273989 |
tgctcaaatctggtttgtaagcatcctcaaatagttctgtatttcgagtagcacaggtcgaaagagtgctctccttgttatcatcattgcttgtaattgt |
33274088 |
T |
|
| Q |
101 |
actagtattactaatggtagttttgctgttacttggagcagaagcaacagcgccatcttcctgttttttgtcgccttttctgttgttaagaagatttctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33274089 |
actagtattactaatggtagttttgctgttacttggagcagaagcaacagcaccatcttcctgttttttgtcgccttttctgttgttaagaagatttctt |
33274188 |
T |
|
| Q |
201 |
atcctggaagcaagaggagaatccaatgagacatgagtgatgaagttggttcgagtgttcg |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33274189 |
atcctggaagcaagaggagaatccaatgagacatgagtgatgaagttggttcgagtgttcg |
33274249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University