View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8095_low_6 (Length: 270)
Name: NF8095_low_6
Description: NF8095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8095_low_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 33273651 - 33273909
Alignment:
| Q |
13 |
ataatacttggaagaaacatttgcagattcattaatttagaccttataaaagttt-aacagaacaaggagcacaagggtggaagatcccataaggcttca |
111 |
Q |
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| T |
33273651 |
ataatatttggaagaaacatttgcagattcattaatttagaccttataaaagttttaacagaacaaggagcacaagggtggaagatcccataaggcttca |
33273750 |
T |
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| Q |
112 |
ttagactcttgaacagtttccatgtattcatgcactccattaatagcataaagtgaagctgatatctgtctttcaaccttcattctttcaaattctgaaa |
211 |
Q |
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| T |
33273751 |
ttagactcttgaacagtttccatgtattcatgcactccattaatagcataaagtgaagctgatatctgtctttcaaccttcattctttcaaattctgaaa |
33273850 |
T |
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| Q |
212 |
gctccaagctagatgcatcggttatgtcatcattcttcgccatatccaataactgagta |
270 |
Q |
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| T |
33273851 |
gctccaagctagatgcatcggttatgtcatcattcttcgccatatccaataactgagta |
33273909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 211
Target Start/End: Complemental strand, 10030766 - 10030635
Alignment:
| Q |
80 |
agcacaagggtggaagatcccataaggcttcattagactcttgaacagtttccatgtattcatgcactccattaatagcataaagtgaagctgatatctg |
179 |
Q |
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||||||| |||| ||||| |||| |||||||| | || |||||| ||| |||||| || || || |||||||| |||||||||||||||||||| || |
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| T |
10030766 |
agcacaaaggtgaaagattccattgagcttcattgcaatcctgaacatttttcatgtactcttgaacaccattaattgcataaagtgaagctgatatttg |
10030667 |
T |
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| Q |
180 |
tctttcaaccttcattctttcaaattctgaaa |
211 |
Q |
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| T |
10030666 |
cctttcaactttcatcctttcaaattctgaaa |
10030635 |
T |
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