View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8095_low_8 (Length: 264)
Name: NF8095_low_8
Description: NF8095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8095_low_8 |
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| [»] scaffold0062 (3 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 16233 - 16449
Alignment:
| Q |
1 |
cctgtagacaagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactccctggtgtttttctttggaacgctgatgact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16233 |
cctgtagacaagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactccctggtgtttttctttggaacgctgatgact |
16332 |
T |
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| Q |
101 |
ctacaattcctctacccaatgagaataaacctttcattttagaggatattttgcaaagcctactcata----agttaatctcgtgatttgcatctataat |
196 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| | |||||||||| ||||||||||||||| |
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| T |
16333 |
ctacaattcctctacccaatgagaataaacctttcgttttagaggatattttgcaaagcctcctcataggttaattaatctcgtcatttgcatctataat |
16432 |
T |
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| Q |
197 |
tttatgggtcaaattag |
213 |
Q |
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||||||||||||||||| |
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| T |
16433 |
tttatgggtcaaattag |
16449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 26401 - 26617
Alignment:
| Q |
1 |
cctgtagacaagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactccctggtgtttttctttggaacgctgatgact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26401 |
cctgtagacaagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactccctggtgtttttctttggaacgctgatgact |
26500 |
T |
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| Q |
101 |
ctacaattcctctacccaatgagaataaacctttcattttagaggatattttgcaaagcctactcata----agttaatctcgtgatttgcatctataat |
196 |
Q |
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| T |
26501 |
ctacaattcctctacccaatgagaataaacctttcgttttagaggatattttgcaaagcctcctcataggttaattaatctcgtcatttgcatctataat |
26600 |
T |
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| Q |
197 |
tttatgggtcaaattag |
213 |
Q |
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||||||||||||||||| |
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| T |
26601 |
tttatgggtcaaattag |
26617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 36567 - 36783
Alignment:
| Q |
1 |
cctgtagacaagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactccctggtgtttttctttggaacgctgatgact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36567 |
cctgtagacaagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactccctggtgtttttctttggaacgctgatgact |
36666 |
T |
|
| Q |
101 |
ctacaattcctctacccaatgagaataaacctttcattttagaggatattttgcaaagcctactcata----agttaatctcgtgatttgcatctataat |
196 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| | |||||||||| ||||||||||||||| |
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| T |
36667 |
ctacaattcctctacccaatgagaataaacctttcgttttagaggatattttgcaaagcctcctcataggttaattaatctcgtcatttgcatctataat |
36766 |
T |
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| Q |
197 |
tttatgggtcaaattag |
213 |
Q |
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||||||||||||||||| |
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| T |
36767 |
tttatgggtcaaattag |
36783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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