View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8096_high_1 (Length: 458)

Name: NF8096_high_1
Description: NF8096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8096_high_1
NF8096_high_1
[»] chr1 (6 HSPs)
chr1 (196-451)||(13567498-13567753)
chr1 (196-368)||(44339160-44339331)
chr1 (298-452)||(31860084-31860251)
chr1 (4-126)||(13567823-13567942)
chr1 (4-126)||(44339403-44339520)
chr1 (309-365)||(48806319-48806375)
[»] chr5 (2 HSPs)
chr5 (195-364)||(5061771-5061940)
chr5 (412-453)||(5061940-5061981)
[»] chr2 (1 HSPs)
chr2 (389-453)||(5564874-5564938)
[»] chr7 (1 HSPs)
chr7 (389-453)||(1884985-1885047)
[»] chr3 (1 HSPs)
chr3 (17-50)||(8122349-8122382)
[»] chr6 (1 HSPs)
chr6 (259-291)||(5072260-5072292)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 196 - 451
Target Start/End: Complemental strand, 13567753 - 13567498
Alignment:
Q  196 cagattcaagaagttgaggactaatatgtgtaatctgtcccaaattgaatgtttaatttatgtacaatgaaattaaaatgaatcaaataattatatggca 295  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  13567753 cagattcaagaagttgaggactgatatgtgtaatctgtcccaaattgaatgtttaatttatgtacaatgaaattaaaatgaattgaataattatatggca 13567654  T
Q  296 ctttggatcagagg-ttaagattttgaggttggaaagggaagatattgaagaaggaatagagccagagaagctggagattgaacgatagaaagagttttt 394  Q
    ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||| ||||  ||||||||    
T  13567653 ctt-ggatcagagggttaagattttgaggttggaaagggaagatattgaagaaggaatagagccagagaagctacatattgaacgttagagggagttttt 13567555  T
Q  395 tcatgaattggatgaccattgaagaagagggagtgagcgaatgagaagaagaagatg 451  Q
     ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  13567554 gcatgaattggatgtccattgaagaagagggagtgagcaaatgagaagaagaagatg 13567498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 196 - 368
Target Start/End: Complemental strand, 44339331 - 44339160
Alignment:
Q  196 cagattcaagaagttgaggactaatatgtgtaatctgtcccaaattgaatgtttaatttatgtacaatgaaattaaaatgaatcaaataattatatggca 295  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  44339331 cagattcaagaagttgaggactgatatgtgtaatctgtcccaaattgaatgtttaatttatgtacaataaaattaaaatgaatcgaataattatatggca 44339232  T
Q  296 ctttggatcag-aggttaagattttgaggttggaaagggaagatattgaagaaggaatagagccagagaagctg 368  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  44339231 c-ttggatcagaaggttaagattttgaggttggaaagggaagatattgaagaaggaataaag-cagagaagctg 44339160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 298 - 452
Target Start/End: Original strand, 31860084 - 31860251
Alignment:
Q  298 ttggatcagagg-ttaagattttgaggttggaaagggaagatattgaagaaggaatagagccagagaagctggagattgaacgataga------------ 384  Q
    |||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||| |||||||||| ||||                
T  31860084 ttggatcagagggttaagattttgaggttggaaaggctagatattgaagaaggaatagagtcagagaagctgcagattgaacgttagagggagtttttgc 31860183  T
Q  385 aagagttttttcatgaattggatgaccattgaagaagagggagtgagcgaatgagaagaagaagatgc 452  Q
    | | |||||| || |||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  31860184 aggtgtttttgcaagaattggatggccattgaagaagagggaatgagcgaatgagaagaagaagatgc 31860251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 4 - 126
Target Start/End: Complemental strand, 13567942 - 13567823
Alignment:
Q  4 tctatttcatgttaattctcgttacaatttcatgttagtttatgagtacatttggnnnnnnnnnnnngttgttactgaattgaggtttatcgtgcctcta 103  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||              ||||||  ||||||||||||||||||||||||    
T  13567942 tctatttcatgttaattctcgttaaaatttcatgttagtttatgagtacatttg---attatatttttttgttatagaattgaggtttatcgtgcctcta 13567846  T
Q  104 gaatttataatcataatcttata 126  Q
    |||||||||||||||||||||||    
T  13567845 gaatttataatcataatcttata 13567823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 4 - 126
Target Start/End: Complemental strand, 44339520 - 44339403
Alignment:
Q  4 tctatttcatgttaattctcgttacaatttcatgttagtttatgagtacatttggnnnnnnnnnnnngttgttactgaattgaggtttatcgtgcctcta 103  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||              ||||||| ||||||||||||||||||||||||    
T  44339520 tctatttgatgttaattctcgttacaatttcatgttagtttatgagtacatttg-----attatttttttgttacagaattgaggtttatcgtgcctcta 44339426  T
Q  104 gaatttataatcataatcttata 126  Q
    ||||||| |||||||||||||||    
T  44339425 gaatttacaatcataatcttata 44339403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 365
Target Start/End: Original strand, 48806319 - 48806375
Alignment:
Q  309 gttaagattttgaggttggaaagggaagatattgaagaaggaatagagccagagaag 365  Q
    |||||| |||||||||||||||||||||| |||||||||||||| |||||| |||||    
T  48806319 gttaaggttttgaggttggaaagggaagagattgaagaaggaattgagccaaagaag 48806375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 195 - 364
Target Start/End: Original strand, 5061771 - 5061940
Alignment:
Q  195 ccagattcaagaagttgaggactaatatgtgtaatctgtcccaaattgaatgtttaatttatgtacaatgaaattaaaatgaatcaaataattatatggc 294  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  5061771 ccagattcaagaagttgaggactgatatgtgtaatctgtcccaaattgaatgtttaatttatgtacaacgaaattaaaatgaatcgaataattatatggc 5061870  T
Q  295 actttggatcaga-ggttaagattttgaggttggaaagggaagatattgaagaaggaatagagccagagaa 364  Q
    || |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5061871 ac-ttggattagagggttaagattttgaggttggaaagggaagatattgaagaaggaatagagccagagaa 5061940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 453
Target Start/End: Original strand, 5061940 - 5061981
Alignment:
Q  412 attgaagaagagggagtgagcgaatgagaagaagaagatgca 453  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  5061940 attgaagaagagggagtgagtgaatgagaagaagaagatgca 5061981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 389 - 453
Target Start/End: Original strand, 5564874 - 5564938
Alignment:
Q  389 gttttttcatgaattggatgaccattgaagaagagggagtgagcgaatgagaagaagaagatgca 453  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  5564874 gtttttgcatgaattggatggccattgaagaagagggagtgagcgaatgagaggaagaagatgca 5564938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 389 - 453
Target Start/End: Original strand, 1884985 - 1885047
Alignment:
Q  389 gttttttcatgaattggatgaccattgaagaagagggagtgagcgaatgagaagaagaagatgca 453  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||||||  ||||||||||||    
T  1884985 gtttttgcatgaattggatggccattgaagaagagagagtgagcgaatgag--gaagaagatgca 1885047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 8122382 - 8122349
Alignment:
Q  17 aattctcgttacaatttcatgttagtttatgagt 50  Q
    |||||||||||||||||||| |||||||||||||    
T  8122382 aattctcgttacaatttcattttagtttatgagt 8122349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 5072260 - 5072292
Alignment:
Q  259 acaatgaaattaaaatgaatcaaataattatat 291  Q
    ||||||||||||||||||||| |||||||||||    
T  5072260 acaatgaaattaaaatgaatcgaataattatat 5072292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University