View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8096_high_4 (Length: 342)
Name: NF8096_high_4
Description: NF8096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8096_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 8 - 290
Target Start/End: Complemental strand, 39675829 - 39675547
Alignment:
| Q |
8 |
ggagaagcagagaccgaagaaaaaagtgtttgttaagtaaagtgaagaagtttgtgacagtgaattctgctgcttttggttcttctttgttttgctggag |
107 |
Q |
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| T |
39675829 |
ggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaagaagtttgtgacagtgaattctgctgcttttggttcttctttgttttgctggag |
39675730 |
T |
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| Q |
108 |
ggatcagaatatatttggcgttgaacttccatttctctcttgttaagtgaaggatttgaaatccagaaaatgaaaagaaagaaaggagttcagggagatt |
207 |
Q |
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| T |
39675729 |
ggatcagaatatatttggcgttgaacttccatttctctcttgttaagtgaaggatttgaaatccagaaaatgaaaagaaagaaaggagttcagggagatt |
39675630 |
T |
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| Q |
208 |
gattggtaatttgtttgaaacttgaaaaagaaagccaagatttagaatgttatttatagacagacaaagaataagagagtgag |
290 |
Q |
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| T |
39675629 |
gattggtaattggtttgaaacttgaaaaagaaagccaagatttagaatgttatttatagacagacaaagaataagagagtgag |
39675547 |
T |
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